Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4291

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
5,001,552	+		Pf6N2E2_4290	0.20	+1.1
5,001,552	+		Pf6N2E2_4290	0.20	-0.8
5,001,552	+		Pf6N2E2_4290	0.20	-0.5
5,001,552	+		Pf6N2E2_4290	0.20	-0.5
5,001,552	+		Pf6N2E2_4290	0.20	+1.1
5,001,553	-		Pf6N2E2_4290	0.20	+1.1
5,001,553	-		Pf6N2E2_4290	0.20	+1.1
5,001,553	-		Pf6N2E2_4290	0.20	-0.2
5,001,553	-		Pf6N2E2_4290	0.20	+1.1
5,001,553	-		Pf6N2E2_4290	0.20	-2.1
5,001,553	-		Pf6N2E2_4290	0.20	+1.1
5,001,553	-		Pf6N2E2_4290	0.20	+0.1
5,001,567	+		Pf6N2E2_4290	0.21	-1.2
5,001,568	-		Pf6N2E2_4290	0.21	-0.5
5,001,759	+		Pf6N2E2_4290	0.39	+1.1
5,001,759	+		Pf6N2E2_4290	0.39	+0.1
5,001,759	+		Pf6N2E2_4290	0.39	-1.2
5,001,760	-		Pf6N2E2_4290	0.39	-0.5
5,001,760	-		Pf6N2E2_4290	0.39	-0.5
5,001,760	-		Pf6N2E2_4290	0.39	+0.1
5,001,760	-		Pf6N2E2_4290	0.39	-0.5
5,001,777	+		Pf6N2E2_4290	0.40	-0.7
5,001,777	+		Pf6N2E2_4290	0.40	-0.5
5,001,778	-		Pf6N2E2_4290	0.41	-1.5
5,001,778	-		Pf6N2E2_4290	0.41	+1.1
5,001,778	-		Pf6N2E2_4290	0.41	+0.1
5,001,825	+		Pf6N2E2_4290	0.45	-0.0
5,001,826	-		Pf6N2E2_4290	0.45	+1.1
5,002,038	+		Pf6N2E2_4290	0.64	-0.5
5,002,038	+		Pf6N2E2_4290	0.64	+0.1
5,002,038	+		Pf6N2E2_4290	0.64	-1.9
5,002,038	+		Pf6N2E2_4290	0.64	+1.1
5,002,038	+		Pf6N2E2_4290	0.64	+1.1
5,002,039	-		Pf6N2E2_4290	0.64	+0.1
5,002,039	-		Pf6N2E2_4290	0.64	+1.1
5,002,039	-		Pf6N2E2_4290	0.64	+1.1
5,002,039	-		Pf6N2E2_4290	0.64	+1.1
5,002,039	-		Pf6N2E2_4290	0.64	+1.1
5,002,039	-		Pf6N2E2_4290	0.64	+0.4
5,002,039	-		Pf6N2E2_4290	0.64	+0.5
5,002,039	-		Pf6N2E2_4290	0.64	-2.1
5,002,039	-		Pf6N2E2_4290	0.64	-1.3
5,002,044	+		Pf6N2E2_4290	0.65	+1.1
5,002,044	+		Pf6N2E2_4290	0.65	+1.1
5,002,044	+		Pf6N2E2_4290	0.65	-1.6
5,002,045	-		Pf6N2E2_4290	0.65	+1.1
5,002,045	-		Pf6N2E2_4290	0.65	+0.1
5,002,045	-		Pf6N2E2_4290	0.65	+0.1
5,002,267	-		Pf6N2E2_4290	0.85	+0.6
5,002,326	+				+1.1
5,002,326	+				-0.8
5,002,326	+				-1.2
5,002,326	+				-0.5
5,002,327	-				-0.4
5,002,327	-				+1.1
5,002,327	-				-0.9
5,002,327	-				-0.5
5,002,327	-				+1.1
5,002,341	+				+1.1
5,002,341	+				+0.1
5,002,341	+				+0.1
5,002,342	-				+0.1
5,002,412	-				-0.5
5,002,412	-				+0.1
5,002,736	+		Pf6N2E2_4291	0.28	+0.1
5,002,736	+		Pf6N2E2_4291	0.28	+1.1
5,002,736	+		Pf6N2E2_4291	0.28	-0.8
5,002,737	-		Pf6N2E2_4291	0.28	-0.7
5,002,737	-		Pf6N2E2_4291	0.28	+2.1
5,002,856	+		Pf6N2E2_4291	0.40	+1.1
5,002,856	+		Pf6N2E2_4291	0.40	-0.9
5,002,856	+		Pf6N2E2_4291	0.40	+1.1
5,002,856	+		Pf6N2E2_4291	0.40	-0.5
5,002,856	+		Pf6N2E2_4291	0.40	+0.1
5,002,890	-		Pf6N2E2_4291	0.43	-0.6
5,002,890	-		Pf6N2E2_4291	0.43	+1.1
5,002,967	+		Pf6N2E2_4291	0.51	-0.8
5,002,968	-		Pf6N2E2_4291	0.51	+0.1
5,002,968	-		Pf6N2E2_4291	0.51	-0.8
5,002,968	-		Pf6N2E2_4291	0.51	-0.5
5,002,974	-		Pf6N2E2_4291	0.51	+1.1
5,003,091	-		Pf6N2E2_4291	0.63	+1.1
5,003,091	-		Pf6N2E2_4291	0.63	-0.9
5,003,141	+		Pf6N2E2_4291	0.68	+1.1
5,003,141	+		Pf6N2E2_4291	0.68	-1.2
5,003,141	+		Pf6N2E2_4291	0.68	+1.1
5,003,141	+		Pf6N2E2_4291	0.68	+0.6
5,003,142	-		Pf6N2E2_4291	0.68	-0.6
5,003,142	-		Pf6N2E2_4291	0.68	-0.8
5,003,142	-		Pf6N2E2_4291	0.68	-1.6
5,003,142	-		Pf6N2E2_4291	0.68	+0.1
5,003,142	-		Pf6N2E2_4291	0.68	+0.1
5,003,142	-		Pf6N2E2_4291	0.68	+1.1
5,003,142	-		Pf6N2E2_4291	0.68	-2.1
5,003,234	+		Pf6N2E2_4291	0.77	+1.1
5,003,235	-		Pf6N2E2_4291	0.77	+0.1
5,003,235	-		Pf6N2E2_4291	0.77	+0.1
5,003,463	-				+0.1
5,003,463	-				-0.1
5,003,589	+				-0.8
5,003,589	+				+1.1
5,003,589	+				-1.7
5,003,743	-				-1.2
5,003,760	+				-0.5
5,003,799	-				+0.1
5,003,802	+				+0.1
5,003,802	+				-0.5
5,003,802	+				+0.1
5,003,802	+				-1.9
5,003,802	+				+1.1
5,003,803	-				-0.5
5,003,803	-				+1.1
5,003,911	-		Pf6N2E2_4292	0.10	-0.5
5,003,911	-		Pf6N2E2_4292	0.10	+0.1
5,004,034	-		Pf6N2E2_4292	0.32	-0.9
5,004,034	-		Pf6N2E2_4292	0.32	+1.1
5,004,034	-		Pf6N2E2_4292	0.32	+1.1
5,004,034	-		Pf6N2E2_4292	0.32	+0.1
5,004,034	-		Pf6N2E2_4292	0.32	+1.1
5,004,034	-		Pf6N2E2_4292	0.32	+1.1
5,004,045	-		Pf6N2E2_4292	0.34	-1.2
5,004,045	-		Pf6N2E2_4292	0.34	+1.1
5,004,045	-		Pf6N2E2_4292	0.34	-1.0
5,004,045	-		Pf6N2E2_4292	0.34	+1.1
5,004,045	-		Pf6N2E2_4292	0.34	+0.1
5,004,151	-		Pf6N2E2_4292	0.53	+0.1
5,004,174	+		Pf6N2E2_4292	0.57	+1.1
5,004,175	-		Pf6N2E2_4292	0.57	+1.1
5,004,175	-		Pf6N2E2_4292	0.57	-0.5
5,004,175	-		Pf6N2E2_4292	0.57	-0.5
5,004,256	-		Pf6N2E2_4292	0.71	+0.1
5,004,256	-		Pf6N2E2_4292	0.71	-0.2
5,004,256	-		Pf6N2E2_4292	0.71	-0.8
5,004,267	+		Pf6N2E2_4292	0.73	+0.1
5,004,268	-		Pf6N2E2_4292	0.73	+1.1
5,004,268	-		Pf6N2E2_4292	0.73	-0.5
5,004,268	-		Pf6N2E2_4292	0.73	+1.1
5,004,268	-		Pf6N2E2_4292	0.73	-0.9
5,004,268	-		Pf6N2E2_4292	0.73	+0.0
5,004,268	-		Pf6N2E2_4292	0.73	+0.1
5,004,268	-		Pf6N2E2_4292	0.73	-0.6
5,004,268	-		Pf6N2E2_4292	0.73	+0.1
5,004,268	-		Pf6N2E2_4292	0.73	-0.5
5,004,268	-		Pf6N2E2_4292	0.73	-1.2
5,004,268	-		Pf6N2E2_4292	0.73	-0.5
5,004,268	-		Pf6N2E2_4292	0.73	-3.0
5,004,274	-		Pf6N2E2_4292	0.74	+0.1
5,004,274	-		Pf6N2E2_4292	0.74	-0.9
5,004,329	-		Pf6N2E2_4292	0.84	+1.1
5,004,369	-				-0.5
5,004,369	-				-2.8
5,004,384	+				+1.1
5,004,384	+				+1.1