Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3718

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3716 and Pf6N2E2_3717 overlap by 4 nucleotidesPf6N2E2_3717 and Pf6N2E2_3718 overlap by 14 nucleotidesPf6N2E2_3718 and Pf6N2E2_3719 overlap by 8 nucleotidesPf6N2E2_3719 and Pf6N2E2_3720 overlap by 4 nucleotides Pf6N2E2_3716 - FIG143263: Glycosyl transferase, at 4,329,608 to 4,330,342 _3716 Pf6N2E2_3717 - Lysophospholipid acyltransferase, at 4,330,339 to 4,331,283 _3717 Pf6N2E2_3718 - Putative histidine ammonia-lyase protein, at 4,331,270 to 4,332,808 _3718 Pf6N2E2_3719 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 4,332,801 to 4,333,226 _3719 Pf6N2E2_3720 - FIG027190: Putative transmembrane protein, at 4,333,223 to 4,333,816 _3720 Position (kb) 4331 4332 4333Strain fitness (log2 ratio) -1 0 1 2at 4330.434 kb on - strand, within Pf6N2E2_3717at 4330.477 kb on + strand, within Pf6N2E2_3717at 4330.477 kb on + strand, within Pf6N2E2_3717at 4330.477 kb on + strand, within Pf6N2E2_3717at 4330.478 kb on - strand, within Pf6N2E2_3717at 4330.478 kb on - strand, within Pf6N2E2_3717at 4330.478 kb on - strand, within Pf6N2E2_3717at 4330.478 kb on - strand, within Pf6N2E2_3717at 4330.478 kb on - strand, within Pf6N2E2_3717at 4330.478 kb on - strand, within Pf6N2E2_3717at 4330.478 kb on - strand, within Pf6N2E2_3717at 4330.522 kb on + strand, within Pf6N2E2_3717at 4330.522 kb on + strand, within Pf6N2E2_3717at 4331.209 kb on + strandat 4331.209 kb on + strandat 4331.209 kb on + strandat 4331.209 kb on + strandat 4331.209 kb on + strandat 4331.210 kb on - strandat 4331.210 kb on - strandat 4331.440 kb on + strand, within Pf6N2E2_3718at 4331.441 kb on - strand, within Pf6N2E2_3718at 4331.441 kb on - strand, within Pf6N2E2_3718at 4331.445 kb on - strand, within Pf6N2E2_3718at 4331.526 kb on - strand, within Pf6N2E2_3718at 4331.526 kb on - strand, within Pf6N2E2_3718at 4331.527 kb on + strand, within Pf6N2E2_3718at 4331.528 kb on - strand, within Pf6N2E2_3718at 4331.528 kb on - strand, within Pf6N2E2_3718at 4331.528 kb on - strand, within Pf6N2E2_3718at 4331.528 kb on - strand, within Pf6N2E2_3718at 4331.528 kb on - strand, within Pf6N2E2_3718at 4331.528 kb on - strand, within Pf6N2E2_3718at 4331.738 kb on + strand, within Pf6N2E2_3718at 4331.738 kb on + strand, within Pf6N2E2_3718at 4331.738 kb on + strand, within Pf6N2E2_3718at 4331.739 kb on - strand, within Pf6N2E2_3718at 4331.739 kb on - strand, within Pf6N2E2_3718at 4331.739 kb on - strand, within Pf6N2E2_3718at 4331.925 kb on - strand, within Pf6N2E2_3718at 4332.243 kb on + strand, within Pf6N2E2_3718at 4332.244 kb on - strand, within Pf6N2E2_3718at 4332.264 kb on - strand, within Pf6N2E2_3718at 4332.274 kb on + strand, within Pf6N2E2_3718at 4332.352 kb on - strand, within Pf6N2E2_3718at 4332.365 kb on + strand, within Pf6N2E2_3718at 4332.366 kb on - strand, within Pf6N2E2_3718at 4332.366 kb on - strand, within Pf6N2E2_3718at 4332.807 kb on - strandat 4332.891 kb on + strand, within Pf6N2E2_3719at 4332.891 kb on + strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.901 kb on - strand, within Pf6N2E2_3719at 4332.901 kb on - strand, within Pf6N2E2_3719at 4332.948 kb on + strand, within Pf6N2E2_3719at 4332.948 kb on + strand, within Pf6N2E2_3719at 4332.949 kb on - strand, within Pf6N2E2_3719at 4333.741 kb on + strand, within Pf6N2E2_3720at 4333.742 kb on - strand, within Pf6N2E2_3720at 4333.749 kb on + strand, within Pf6N2E2_3720

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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4,330,434 - Pf6N2E2_3717 0.10 +0.0
4,330,477 + Pf6N2E2_3717 0.15 +1.0
4,330,477 + Pf6N2E2_3717 0.15 -0.3
4,330,477 + Pf6N2E2_3717 0.15 +0.0
4,330,478 - Pf6N2E2_3717 0.15 +1.0
4,330,478 - Pf6N2E2_3717 0.15 +0.8
4,330,478 - Pf6N2E2_3717 0.15 +1.0
4,330,478 - Pf6N2E2_3717 0.15 +0.0
4,330,478 - Pf6N2E2_3717 0.15 +1.0
4,330,478 - Pf6N2E2_3717 0.15 +1.0
4,330,478 - Pf6N2E2_3717 0.15 -0.1
4,330,522 + Pf6N2E2_3717 0.19 +1.0
4,330,522 + Pf6N2E2_3717 0.19 -0.7
4,331,209 + +1.0
4,331,209 + -1.7
4,331,209 + +1.0
4,331,209 + -1.3
4,331,209 + -0.6
4,331,210 - +1.0
4,331,210 - +0.0
4,331,440 + Pf6N2E2_3718 0.11 -0.3
4,331,441 - Pf6N2E2_3718 0.11 +1.0
4,331,441 - Pf6N2E2_3718 0.11 +0.0
4,331,445 - Pf6N2E2_3718 0.11 +1.0
4,331,526 - Pf6N2E2_3718 0.17 -0.6
4,331,526 - Pf6N2E2_3718 0.17 +0.3
4,331,527 + Pf6N2E2_3718 0.17 +1.0
4,331,528 - Pf6N2E2_3718 0.17 +0.0
4,331,528 - Pf6N2E2_3718 0.17 +0.0
4,331,528 - Pf6N2E2_3718 0.17 -1.3
4,331,528 - Pf6N2E2_3718 0.17 -1.3
4,331,528 - Pf6N2E2_3718 0.17 +0.6
4,331,528 - Pf6N2E2_3718 0.17 +0.0
4,331,738 + Pf6N2E2_3718 0.30 +1.0
4,331,738 + Pf6N2E2_3718 0.30 +0.0
4,331,738 + Pf6N2E2_3718 0.30 +0.0
4,331,739 - Pf6N2E2_3718 0.30 +0.0
4,331,739 - Pf6N2E2_3718 0.30 -1.3
4,331,739 - Pf6N2E2_3718 0.30 +1.0
4,331,925 - Pf6N2E2_3718 0.43 +0.0
4,332,243 + Pf6N2E2_3718 0.63 -0.1
4,332,244 - Pf6N2E2_3718 0.63 +0.0
4,332,264 - Pf6N2E2_3718 0.65 -0.6
4,332,274 + Pf6N2E2_3718 0.65 -0.6
4,332,352 - Pf6N2E2_3718 0.70 +0.1
4,332,365 + Pf6N2E2_3718 0.71 -0.9
4,332,366 - Pf6N2E2_3718 0.71 -0.5
4,332,366 - Pf6N2E2_3718 0.71 +2.0
4,332,807 - +0.0
4,332,891 + Pf6N2E2_3719 0.21 +1.0
4,332,891 + Pf6N2E2_3719 0.21 +0.0
4,332,892 - Pf6N2E2_3719 0.21 +1.0
4,332,892 - Pf6N2E2_3719 0.21 +0.2
4,332,892 - Pf6N2E2_3719 0.21 +0.0
4,332,892 - Pf6N2E2_3719 0.21 -0.2
4,332,901 - Pf6N2E2_3719 0.23 +1.0
4,332,901 - Pf6N2E2_3719 0.23 -0.2
4,332,948 + Pf6N2E2_3719 0.35 +1.0
4,332,948 + Pf6N2E2_3719 0.35 +0.0
4,332,949 - Pf6N2E2_3719 0.35 +1.0
4,333,741 + Pf6N2E2_3720 0.87 -0.6
4,333,742 - Pf6N2E2_3720 0.87 +1.0
4,333,749 + Pf6N2E2_3720 0.89 +0.0

Or see this region's nucleotide sequence