Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01515

Experiment: D-Galacturonic Acid (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01510 and PFLU_RS01515 are separated by 176 nucleotidesPFLU_RS01515 and PFLU_RS01520 are separated by 241 nucleotides PFLU_RS01510: PFLU_RS01510 - cell division protein FtsQ, at 340,576 to 341,700 _RS01510 PFLU_RS01515: PFLU_RS01515 - cellulose synthase operon protein YhjQ, at 341,877 to 342,812 _RS01515 PFLU_RS01520: PFLU_RS01520 - methyltransferase, at 343,054 to 344,241 _RS01520 Position (kb) 341 342 343Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 340.897 kb on - strand, within PFLU_RS01510at 340.996 kb on - strand, within PFLU_RS01510at 340.996 kb on - strand, within PFLU_RS01510at 341.176 kb on + strand, within PFLU_RS01510at 341.176 kb on + strand, within PFLU_RS01510at 341.428 kb on - strand, within PFLU_RS01510at 341.428 kb on - strand, within PFLU_RS01510at 341.496 kb on + strand, within PFLU_RS01510at 341.594 kb on - strandat 341.594 kb on - strandat 341.594 kb on - strandat 341.594 kb on - strandat 341.629 kb on - strandat 341.629 kb on - strandat 341.629 kb on - strandat 341.629 kb on - strandat 341.750 kb on + strandat 341.849 kb on + strandat 341.850 kb on - strandat 341.885 kb on + strandat 341.885 kb on + strandat 341.885 kb on + strandat 341.886 kb on - strandat 341.886 kb on - strandat 341.886 kb on - strandat 341.886 kb on - strandat 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.104 kb on + strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.105 kb on - strand, within PFLU_RS01515at 342.410 kb on + strand, within PFLU_RS01515at 342.440 kb on + strand, within PFLU_RS01515at 342.441 kb on - strand, within PFLU_RS01515at 342.441 kb on - strand, within PFLU_RS01515at 342.447 kb on + strand, within PFLU_RS01515at 342.448 kb on - strand, within PFLU_RS01515at 342.673 kb on + strand, within PFLU_RS01515at 342.674 kb on - strand, within PFLU_RS01515at 342.674 kb on - strand, within PFLU_RS01515at 342.797 kb on + strandat 342.810 kb on + strandat 342.810 kb on + strandat 342.810 kb on + strandat 342.810 kb on + strandat 342.811 kb on - strandat 342.822 kb on + strandat 342.823 kb on - strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.844 kb on + strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.845 kb on - strandat 342.977 kb on - strandat 342.981 kb on + strandat 342.981 kb on + strandat 342.981 kb on + strandat 342.981 kb on + strandat 342.982 kb on - strandat 342.982 kb on - strandat 342.982 kb on - strandat 343.021 kb on + strandat 343.130 kb on + strandat 343.131 kb on - strandat 343.174 kb on + strand, within PFLU_RS01520at 343.174 kb on + strand, within PFLU_RS01520at 343.174 kb on + strand, within PFLU_RS01520at 343.174 kb on + strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.175 kb on - strand, within PFLU_RS01520at 343.247 kb on + strand, within PFLU_RS01520at 343.247 kb on + strand, within PFLU_RS01520at 343.247 kb on + strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.248 kb on - strand, within PFLU_RS01520at 343.255 kb on + strand, within PFLU_RS01520at 343.316 kb on + strand, within PFLU_RS01520at 343.316 kb on + strand, within PFLU_RS01520at 343.316 kb on + strand, within PFLU_RS01520at 343.317 kb on - strand, within PFLU_RS01520at 343.370 kb on + strand, within PFLU_RS01520at 343.370 kb on + strand, within PFLU_RS01520at 343.370 kb on + strand, within PFLU_RS01520at 343.371 kb on - strand, within PFLU_RS01520at 343.550 kb on + strand, within PFLU_RS01520at 343.551 kb on - strand, within PFLU_RS01520at 343.551 kb on - strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.574 kb on + strand, within PFLU_RS01520at 343.575 kb on - strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.636 kb on + strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.637 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520at 343.785 kb on - strand, within PFLU_RS01520

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) 5 mM
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340,897 - PFLU_RS01510 0.29 -2.2
340,996 - PFLU_RS01510 0.37 +0.8
340,996 - PFLU_RS01510 0.37 -2.1
341,176 + PFLU_RS01510 0.53 +1.2
341,176 + PFLU_RS01510 0.53 -2.9
341,428 - PFLU_RS01510 0.76 +0.8
341,428 - PFLU_RS01510 0.76 +0.3
341,496 + PFLU_RS01510 0.82 -0.0
341,594 - +0.1
341,594 - -0.8
341,594 - -1.1
341,594 - +1.0
341,629 - -0.4
341,629 - -0.1
341,629 - -1.8
341,629 - -1.0
341,750 + +0.2
341,849 + -0.0
341,850 - -1.5
341,885 + -0.4
341,885 + -0.4
341,885 + -2.3
341,886 - +0.2
341,886 - -0.8
341,886 - +0.9
341,886 - -1.3
342,104 + PFLU_RS01515 0.24 -0.5
342,104 + PFLU_RS01515 0.24 +0.5
342,104 + PFLU_RS01515 0.24 +0.5
342,104 + PFLU_RS01515 0.24 -1.2
342,104 + PFLU_RS01515 0.24 +0.2
342,104 + PFLU_RS01515 0.24 -1.2
342,105 - PFLU_RS01515 0.24 +0.2
342,105 - PFLU_RS01515 0.24 +0.3
342,105 - PFLU_RS01515 0.24 +0.3
342,105 - PFLU_RS01515 0.24 -0.2
342,105 - PFLU_RS01515 0.24 +0.4
342,410 + PFLU_RS01515 0.57 +1.2
342,440 + PFLU_RS01515 0.60 +0.3
342,441 - PFLU_RS01515 0.60 +0.0
342,441 - PFLU_RS01515 0.60 +0.8
342,447 + PFLU_RS01515 0.61 -0.5
342,448 - PFLU_RS01515 0.61 +1.1
342,673 + PFLU_RS01515 0.85 +0.1
342,674 - PFLU_RS01515 0.85 +0.7
342,674 - PFLU_RS01515 0.85 +0.8
342,797 + +0.3
342,810 + -0.9
342,810 + -0.1
342,810 + -0.5
342,810 + +0.3
342,811 - -1.5
342,822 + -1.7
342,823 - +0.2
342,844 + +0.9
342,844 + +0.1
342,844 + -0.5
342,844 + +1.3
342,844 + -0.7
342,844 + -2.7
342,844 + +2.5
342,844 + +1.7
342,844 + -0.2
342,845 - +0.9
342,845 - -0.3
342,845 - -0.8
342,845 - -0.1
342,845 - -1.5
342,845 - +0.2
342,845 - -0.1
342,845 - -0.1
342,845 - -3.0
342,845 - -1.1
342,977 - -0.9
342,981 + +1.0
342,981 + +1.5
342,981 + -1.8
342,981 + +0.6
342,982 - +1.1
342,982 - -0.7
342,982 - -1.0
343,021 + +1.5
343,130 + +0.0
343,131 - -0.8
343,174 + PFLU_RS01520 0.10 -0.9
343,174 + PFLU_RS01520 0.10 -0.8
343,174 + PFLU_RS01520 0.10 -0.2
343,174 + PFLU_RS01520 0.10 +1.5
343,175 - PFLU_RS01520 0.10 +1.8
343,175 - PFLU_RS01520 0.10 +1.3
343,175 - PFLU_RS01520 0.10 -0.5
343,175 - PFLU_RS01520 0.10 +0.7
343,247 + PFLU_RS01520 0.16 -0.6
343,247 + PFLU_RS01520 0.16 +1.0
343,247 + PFLU_RS01520 0.16 -3.0
343,248 - PFLU_RS01520 0.16 +0.8
343,248 - PFLU_RS01520 0.16 -0.2
343,248 - PFLU_RS01520 0.16 +1.7
343,248 - PFLU_RS01520 0.16 +0.1
343,255 + PFLU_RS01520 0.17 +0.3
343,316 + PFLU_RS01520 0.22 -1.0
343,316 + PFLU_RS01520 0.22 -0.4
343,316 + PFLU_RS01520 0.22 +0.1
343,317 - PFLU_RS01520 0.22 +0.1
343,370 + PFLU_RS01520 0.27 -1.1
343,370 + PFLU_RS01520 0.27 -0.3
343,370 + PFLU_RS01520 0.27 +0.8
343,371 - PFLU_RS01520 0.27 +1.2
343,550 + PFLU_RS01520 0.42 +0.5
343,551 - PFLU_RS01520 0.42 -1.0
343,551 - PFLU_RS01520 0.42 +1.5
343,574 + PFLU_RS01520 0.44 +0.1
343,574 + PFLU_RS01520 0.44 -0.2
343,574 + PFLU_RS01520 0.44 +0.1
343,574 + PFLU_RS01520 0.44 +0.1
343,574 + PFLU_RS01520 0.44 +0.9
343,575 - PFLU_RS01520 0.44 -0.3
343,636 + PFLU_RS01520 0.49 +1.5
343,636 + PFLU_RS01520 0.49 -1.2
343,636 + PFLU_RS01520 0.49 -1.1
343,636 + PFLU_RS01520 0.49 +0.7
343,636 + PFLU_RS01520 0.49 -0.6
343,636 + PFLU_RS01520 0.49 -1.5
343,636 + PFLU_RS01520 0.49 +0.4
343,636 + PFLU_RS01520 0.49 +0.4
343,636 + PFLU_RS01520 0.49 +0.7
343,636 + PFLU_RS01520 0.49 -0.9
343,637 - PFLU_RS01520 0.49 +0.1
343,637 - PFLU_RS01520 0.49 -0.1
343,637 - PFLU_RS01520 0.49 -0.1
343,637 - PFLU_RS01520 0.49 -0.2
343,637 - PFLU_RS01520 0.49 -0.4
343,637 - PFLU_RS01520 0.49 +0.1
343,637 - PFLU_RS01520 0.49 +1.5
343,637 - PFLU_RS01520 0.49 -0.5
343,637 - PFLU_RS01520 0.49 -0.8
343,637 - PFLU_RS01520 0.49 -0.1
343,637 - PFLU_RS01520 0.49 -0.8
343,637 - PFLU_RS01520 0.49 -0.4
343,785 - PFLU_RS01520 0.62 +0.5
343,785 - PFLU_RS01520 0.62 +0.8
343,785 - PFLU_RS01520 0.62 +0.9
343,785 - PFLU_RS01520 0.62 +1.7
343,785 - PFLU_RS01520 0.62 -0.1
343,785 - PFLU_RS01520 0.62 -0.5
343,785 - PFLU_RS01520 0.62 +0.3

Or see this region's nucleotide sequence