Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01395

Experiment: L-Leucine (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS01385 and PFLU_RS01390 overlap by 4 nucleotidesPFLU_RS01390 and PFLU_RS01395 are separated by 66 nucleotidesPFLU_RS01395 and PFLU_RS01400 are separated by 26 nucleotides PFLU_RS01385: PFLU_RS01385 - ADP compounds hydrolase NudE, at 307,891 to 308,457 _RS01385 PFLU_RS01390: PFLU_RS01390 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 308,454 to 309,290 _RS01390 PFLU_RS01395: PFLU_RS01395 - thioesterase, at 309,357 to 309,812 _RS01395 PFLU_RS01400: PFLU_RS01400 - sigma-54-dependent Fis family transcriptional regulator, at 309,839 to 311,215 _RS01400 Position (kb) 309 310Strain fitness (log2 ratio) -2 -1 0 1 2at 308.410 kb on + strandat 308.411 kb on - strandat 308.411 kb on - strandat 308.411 kb on - strandat 308.448 kb on + strandat 308.470 kb on + strandat 308.470 kb on + strandat 308.470 kb on + strandat 308.470 kb on + strandat 308.471 kb on - strandat 308.471 kb on - strandat 308.527 kb on + strandat 308.528 kb on - strandat 308.535 kb on + strandat 308.809 kb on + strand, within PFLU_RS01390at 308.809 kb on + strand, within PFLU_RS01390at 308.809 kb on + strand, within PFLU_RS01390at 308.810 kb on - strand, within PFLU_RS01390at 308.810 kb on - strand, within PFLU_RS01390at 308.810 kb on - strand, within PFLU_RS01390at 308.810 kb on - strand, within PFLU_RS01390at 308.810 kb on - strand, within PFLU_RS01390at 308.810 kb on - strand, within PFLU_RS01390at 308.847 kb on + strand, within PFLU_RS01390at 308.847 kb on + strand, within PFLU_RS01390at 308.847 kb on + strand, within PFLU_RS01390at 308.847 kb on + strand, within PFLU_RS01390at 308.848 kb on - strand, within PFLU_RS01390at 308.848 kb on - strand, within PFLU_RS01390at 308.946 kb on - strand, within PFLU_RS01390at 308.946 kb on - strand, within PFLU_RS01390at 308.946 kb on - strand, within PFLU_RS01390at 309.038 kb on + strand, within PFLU_RS01390at 309.038 kb on + strand, within PFLU_RS01390at 309.038 kb on + strand, within PFLU_RS01390at 309.038 kb on + strand, within PFLU_RS01390at 309.039 kb on - strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.040 kb on + strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.041 kb on - strand, within PFLU_RS01390at 309.288 kb on + strandat 309.289 kb on - strandat 309.289 kb on - strandat 309.289 kb on - strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.373 kb on + strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.374 kb on - strandat 309.383 kb on + strandat 309.383 kb on + strandat 309.383 kb on + strandat 309.455 kb on - strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.463 kb on + strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.464 kb on - strand, within PFLU_RS01395at 309.544 kb on + strand, within PFLU_RS01395at 309.544 kb on + strand, within PFLU_RS01395at 309.545 kb on - strand, within PFLU_RS01395at 309.572 kb on + strand, within PFLU_RS01395at 309.572 kb on + strand, within PFLU_RS01395at 309.572 kb on + strand, within PFLU_RS01395at 309.646 kb on + strand, within PFLU_RS01395at 309.647 kb on - strand, within PFLU_RS01395at 309.759 kb on - strand, within PFLU_RS01395at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.121 kb on + strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.122 kb on - strand, within PFLU_RS01400at 310.138 kb on + strand, within PFLU_RS01400at 310.139 kb on - strand, within PFLU_RS01400at 310.296 kb on + strand, within PFLU_RS01400at 310.297 kb on - strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.299 kb on + strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.300 kb on - strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.448 kb on + strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.449 kb on - strand, within PFLU_RS01400at 310.628 kb on - strand, within PFLU_RS01400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C) 10 mM
remove
308,410 + +0.3
308,411 - +0.0
308,411 - +0.5
308,411 - -0.7
308,448 + +1.0
308,470 + -2.2
308,470 + -0.6
308,470 + -0.7
308,470 + -1.4
308,471 - +0.6
308,471 - +0.2
308,527 + -1.2
308,528 - +0.0
308,535 + +0.5
308,809 + PFLU_RS01390 0.42 +1.6
308,809 + PFLU_RS01390 0.42 -2.3
308,809 + PFLU_RS01390 0.42 +0.6
308,810 - PFLU_RS01390 0.43 +0.2
308,810 - PFLU_RS01390 0.43 -2.1
308,810 - PFLU_RS01390 0.43 +0.6
308,810 - PFLU_RS01390 0.43 +1.1
308,810 - PFLU_RS01390 0.43 +0.0
308,810 - PFLU_RS01390 0.43 +1.2
308,847 + PFLU_RS01390 0.47 +1.6
308,847 + PFLU_RS01390 0.47 -0.8
308,847 + PFLU_RS01390 0.47 +0.4
308,847 + PFLU_RS01390 0.47 -1.2
308,848 - PFLU_RS01390 0.47 -1.8
308,848 - PFLU_RS01390 0.47 -0.5
308,946 - PFLU_RS01390 0.59 -0.2
308,946 - PFLU_RS01390 0.59 -1.2
308,946 - PFLU_RS01390 0.59 +0.6
309,038 + PFLU_RS01390 0.70 +0.6
309,038 + PFLU_RS01390 0.70 -0.7
309,038 + PFLU_RS01390 0.70 +0.3
309,038 + PFLU_RS01390 0.70 +0.6
309,039 - PFLU_RS01390 0.70 +0.8
309,040 + PFLU_RS01390 0.70 +0.0
309,040 + PFLU_RS01390 0.70 -0.4
309,040 + PFLU_RS01390 0.70 +1.3
309,040 + PFLU_RS01390 0.70 +0.6
309,040 + PFLU_RS01390 0.70 +0.0
309,040 + PFLU_RS01390 0.70 -0.7
309,040 + PFLU_RS01390 0.70 +1.0
309,040 + PFLU_RS01390 0.70 -0.5
309,040 + PFLU_RS01390 0.70 +1.4
309,040 + PFLU_RS01390 0.70 +0.3
309,040 + PFLU_RS01390 0.70 +1.3
309,041 - PFLU_RS01390 0.70 -0.2
309,041 - PFLU_RS01390 0.70 -0.2
309,041 - PFLU_RS01390 0.70 -0.8
309,041 - PFLU_RS01390 0.70 +0.0
309,041 - PFLU_RS01390 0.70 -1.0
309,041 - PFLU_RS01390 0.70 -0.1
309,288 + +0.5
309,289 - -2.5
309,289 - +1.4
309,289 - -0.3
309,373 + +0.5
309,373 + -0.8
309,373 + +0.8
309,373 + -0.5
309,373 + +0.0
309,373 + +0.3
309,373 + -0.1
309,373 + +0.4
309,373 + +1.0
309,374 - -0.8
309,374 - +0.2
309,374 - +0.6
309,374 - -1.5
309,374 - -0.5
309,374 - -0.0
309,383 + +1.0
309,383 + +0.5
309,383 + +1.1
309,455 - PFLU_RS01395 0.21 -1.2
309,463 + PFLU_RS01395 0.23 -0.4
309,463 + PFLU_RS01395 0.23 -0.4
309,463 + PFLU_RS01395 0.23 -0.8
309,463 + PFLU_RS01395 0.23 -0.3
309,463 + PFLU_RS01395 0.23 +1.6
309,463 + PFLU_RS01395 0.23 -0.1
309,463 + PFLU_RS01395 0.23 +0.2
309,463 + PFLU_RS01395 0.23 +1.5
309,463 + PFLU_RS01395 0.23 -1.5
309,463 + PFLU_RS01395 0.23 -0.8
309,463 + PFLU_RS01395 0.23 -0.6
309,464 - PFLU_RS01395 0.23 +0.5
309,464 - PFLU_RS01395 0.23 +0.4
309,464 - PFLU_RS01395 0.23 +0.8
309,464 - PFLU_RS01395 0.23 -1.6
309,464 - PFLU_RS01395 0.23 +0.4
309,464 - PFLU_RS01395 0.23 +0.0
309,464 - PFLU_RS01395 0.23 -1.1
309,464 - PFLU_RS01395 0.23 -0.6
309,464 - PFLU_RS01395 0.23 -0.4
309,464 - PFLU_RS01395 0.23 -0.2
309,544 + PFLU_RS01395 0.41 -0.5
309,544 + PFLU_RS01395 0.41 -0.4
309,545 - PFLU_RS01395 0.41 +0.2
309,572 + PFLU_RS01395 0.47 +2.3
309,572 + PFLU_RS01395 0.47 -1.3
309,572 + PFLU_RS01395 0.47 +0.2
309,646 + PFLU_RS01395 0.63 -0.6
309,647 - PFLU_RS01395 0.64 +0.6
309,759 - PFLU_RS01395 0.88 +0.2
310,121 + PFLU_RS01400 0.20 -0.0
310,121 + PFLU_RS01400 0.20 -0.0
310,121 + PFLU_RS01400 0.20 -0.3
310,121 + PFLU_RS01400 0.20 +1.3
310,121 + PFLU_RS01400 0.20 +0.5
310,121 + PFLU_RS01400 0.20 -0.9
310,121 + PFLU_RS01400 0.20 -0.5
310,121 + PFLU_RS01400 0.20 -0.0
310,121 + PFLU_RS01400 0.20 -0.1
310,121 + PFLU_RS01400 0.20 -0.1
310,121 + PFLU_RS01400 0.20 -0.6
310,121 + PFLU_RS01400 0.20 +0.0
310,121 + PFLU_RS01400 0.20 -1.2
310,121 + PFLU_RS01400 0.20 +0.1
310,121 + PFLU_RS01400 0.20 +0.0
310,121 + PFLU_RS01400 0.20 -0.1
310,122 - PFLU_RS01400 0.21 -0.2
310,122 - PFLU_RS01400 0.21 -0.2
310,122 - PFLU_RS01400 0.21 -0.0
310,122 - PFLU_RS01400 0.21 -0.5
310,122 - PFLU_RS01400 0.21 +1.6
310,122 - PFLU_RS01400 0.21 +0.9
310,122 - PFLU_RS01400 0.21 -1.2
310,122 - PFLU_RS01400 0.21 -0.4
310,122 - PFLU_RS01400 0.21 -0.9
310,122 - PFLU_RS01400 0.21 +1.6
310,122 - PFLU_RS01400 0.21 -0.5
310,122 - PFLU_RS01400 0.21 -0.1
310,122 - PFLU_RS01400 0.21 -1.4
310,122 - PFLU_RS01400 0.21 -0.4
310,122 - PFLU_RS01400 0.21 +1.0
310,138 + PFLU_RS01400 0.22 -0.2
310,139 - PFLU_RS01400 0.22 -0.4
310,296 + PFLU_RS01400 0.33 +1.0
310,297 - PFLU_RS01400 0.33 -0.8
310,299 + PFLU_RS01400 0.33 +0.6
310,299 + PFLU_RS01400 0.33 +0.9
310,299 + PFLU_RS01400 0.33 -2.1
310,299 + PFLU_RS01400 0.33 -1.2
310,299 + PFLU_RS01400 0.33 -0.2
310,299 + PFLU_RS01400 0.33 +0.2
310,299 + PFLU_RS01400 0.33 -1.8
310,299 + PFLU_RS01400 0.33 -0.8
310,299 + PFLU_RS01400 0.33 -0.5
310,299 + PFLU_RS01400 0.33 +0.0
310,299 + PFLU_RS01400 0.33 -1.4
310,299 + PFLU_RS01400 0.33 -2.1
310,299 + PFLU_RS01400 0.33 -0.1
310,300 - PFLU_RS01400 0.33 +0.4
310,300 - PFLU_RS01400 0.33 -0.1
310,300 - PFLU_RS01400 0.33 -0.5
310,300 - PFLU_RS01400 0.33 -0.0
310,300 - PFLU_RS01400 0.33 -0.7
310,300 - PFLU_RS01400 0.33 +0.5
310,300 - PFLU_RS01400 0.33 +0.3
310,300 - PFLU_RS01400 0.33 +0.1
310,300 - PFLU_RS01400 0.33 +0.4
310,300 - PFLU_RS01400 0.33 -0.8
310,300 - PFLU_RS01400 0.33 -0.0
310,300 - PFLU_RS01400 0.33 -0.8
310,300 - PFLU_RS01400 0.33 -1.1
310,300 - PFLU_RS01400 0.33 -0.9
310,300 - PFLU_RS01400 0.33 -0.4
310,300 - PFLU_RS01400 0.33 -1.1
310,300 - PFLU_RS01400 0.33 -1.5
310,448 + PFLU_RS01400 0.44 -0.1
310,448 + PFLU_RS01400 0.44 -0.5
310,448 + PFLU_RS01400 0.44 +0.6
310,448 + PFLU_RS01400 0.44 +0.6
310,448 + PFLU_RS01400 0.44 +0.4
310,448 + PFLU_RS01400 0.44 +1.2
310,449 - PFLU_RS01400 0.44 -2.5
310,449 - PFLU_RS01400 0.44 +0.8
310,449 - PFLU_RS01400 0.44 -0.5
310,449 - PFLU_RS01400 0.44 +0.3
310,449 - PFLU_RS01400 0.44 -2.2
310,449 - PFLU_RS01400 0.44 +0.9
310,449 - PFLU_RS01400 0.44 -1.4
310,449 - PFLU_RS01400 0.44 +0.3
310,628 - PFLU_RS01400 0.57 +0.0

Or see this region's nucleotide sequence