Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15535

Experiment: NAG (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C) 10 mM
3,476,382	-		PFLU_RS15530	0.53	+1.0
3,476,382	-		PFLU_RS15530	0.53	-0.7
3,476,382	-		PFLU_RS15530	0.53	+1.3
3,476,382	-		PFLU_RS15530	0.53	+1.5
3,476,382	-		PFLU_RS15530	0.53	+2.0
3,476,406	+		PFLU_RS15530	0.55	-0.3
3,476,407	-		PFLU_RS15530	0.55	+1.6
3,476,407	-		PFLU_RS15530	0.55	-1.6
3,476,453	-		PFLU_RS15530	0.58	-1.9
3,476,487	+		PFLU_RS15530	0.60	-0.7
3,476,487	+		PFLU_RS15530	0.60	+0.4
3,476,488	-		PFLU_RS15530	0.60	-0.4
3,476,488	-		PFLU_RS15530	0.60	+0.6
3,476,497	+		PFLU_RS15530	0.60	+0.9
3,476,498	-		PFLU_RS15530	0.60	-1.7
3,476,599	+		PFLU_RS15530	0.66	-0.9
3,476,629	+		PFLU_RS15530	0.68	+0.5
3,476,892	+		PFLU_RS15530	0.83	-0.5
3,476,893	-		PFLU_RS15530	0.83	-0.6
3,476,893	-		PFLU_RS15530	0.83	-0.1
3,476,907	+		PFLU_RS15530	0.84	+0.3
3,476,907	+		PFLU_RS15530	0.84	+0.7
3,476,907	+		PFLU_RS15530	0.84	-0.9
3,476,907	+		PFLU_RS15530	0.84	-3.6
3,476,907	+		PFLU_RS15530	0.84	-1.1
3,476,908	-		PFLU_RS15530	0.84	+1.0
3,476,908	-		PFLU_RS15530	0.84	+1.3
3,476,910	+		PFLU_RS15530	0.84	+2.1
3,476,911	-		PFLU_RS15530	0.84	+0.2
3,476,911	-		PFLU_RS15530	0.84	+1.5
3,477,111	+				+0.6
3,477,111	+				-0.1
3,477,111	+				-0.1
3,477,111	+				+0.3
3,477,111	+				+0.8
3,477,111	+				+0.4
3,477,112	-				+0.2
3,477,112	-				+0.7
3,477,112	-				+1.8
3,477,112	-				+0.8
3,477,112	-				+1.7
3,477,112	-				+0.0
3,477,112	-				+0.1
3,477,115	+				+0.3
3,477,116	-				-0.5
3,477,116	-				+2.1
3,477,121	+				+0.8
3,477,121	+				+0.5
3,477,121	+				+0.3
3,477,122	-				+0.8
3,477,122	-				+0.3
3,477,122	-				+0.9
3,477,122	-				-0.3
3,477,122	-				-0.6
3,477,125	+				+1.3
3,477,125	+				-0.2
3,477,126	-				-0.4
3,477,126	-				+2.8
3,477,126	-				+0.9
3,477,165	+				-0.0
3,477,165	+				-1.3
3,477,187	+				-3.1
3,477,187	+				+0.1
3,477,187	+				-0.6
3,477,188	-				+2.3
3,477,188	-				+0.6
3,477,188	-				+2.8
3,477,188	-				-0.5
3,477,188	-				+0.5
3,477,188	-				+0.4
3,477,211	+				-0.0
3,477,232	+				+0.0
3,477,232	+				+2.3
3,477,232	+				-1.2
3,477,233	-				+1.0
3,477,233	-				+0.3
3,477,233	-				+0.8
3,477,304	-				+0.4
3,477,373	-				-0.5
3,477,478	+				-1.1
3,477,587	+		PFLU_RS15535	0.17	-0.3
3,477,587	+		PFLU_RS15535	0.17	-0.9
3,477,587	+		PFLU_RS15535	0.17	-0.3
3,477,666	+		PFLU_RS15535	0.23	+0.0
3,477,667	-		PFLU_RS15535	0.23	-0.3
3,477,667	-		PFLU_RS15535	0.23	-0.9
3,477,725	-		PFLU_RS15535	0.28	+0.9
3,477,732	+		PFLU_RS15535	0.29	+0.5
3,477,732	+		PFLU_RS15535	0.29	+1.8
3,477,777	+		PFLU_RS15535	0.32	+0.4
3,477,777	+		PFLU_RS15535	0.32	+0.1
3,477,778	-		PFLU_RS15535	0.32	+0.6
3,477,861	+		PFLU_RS15535	0.39	+0.8
3,477,861	+		PFLU_RS15535	0.39	+1.8
3,477,861	+		PFLU_RS15535	0.39	-0.5
3,477,862	-		PFLU_RS15535	0.39	+0.3
3,477,862	-		PFLU_RS15535	0.39	+0.7
3,477,862	-		PFLU_RS15535	0.39	-0.4
3,477,862	-		PFLU_RS15535	0.39	+3.1
3,477,897	+		PFLU_RS15535	0.42	+1.3
3,477,897	+		PFLU_RS15535	0.42	-0.3
3,477,898	-		PFLU_RS15535	0.42	+0.3
3,477,905	-		PFLU_RS15535	0.42	+0.4
3,477,905	-		PFLU_RS15535	0.42	-0.8
3,477,905	-		PFLU_RS15535	0.42	+0.6
3,477,932	-		PFLU_RS15535	0.45	-2.7
3,477,945	+		PFLU_RS15535	0.46	-1.6
3,477,945	+		PFLU_RS15535	0.46	+1.5
3,477,945	+		PFLU_RS15535	0.46	-0.3
3,477,946	-		PFLU_RS15535	0.46	+0.5
3,477,946	-		PFLU_RS15535	0.46	-0.9
3,478,025	+		PFLU_RS15535	0.52	-1.6
3,478,025	+		PFLU_RS15535	0.52	-0.6
3,478,026	-		PFLU_RS15535	0.52	-2.1
3,478,041	+		PFLU_RS15535	0.53	+0.0
3,478,041	+		PFLU_RS15535	0.53	+0.6
3,478,041	+		PFLU_RS15535	0.53	-1.9
3,478,041	+		PFLU_RS15535	0.53	+0.3
3,478,041	+		PFLU_RS15535	0.53	+0.3
3,478,042	-		PFLU_RS15535	0.53	-2.7
3,478,042	-		PFLU_RS15535	0.53	-1.7
3,478,042	-		PFLU_RS15535	0.53	+0.7
3,478,042	-		PFLU_RS15535	0.53	-1.6
3,478,262	-		PFLU_RS15535	0.71	+1.3
3,478,377	+		PFLU_RS15535	0.80	+2.0
3,478,378	-		PFLU_RS15535	0.80	+1.0
3,478,378	-		PFLU_RS15535	0.80	+0.9
3,478,378	-		PFLU_RS15535	0.80	-0.3
3,478,378	-		PFLU_RS15535	0.80	-0.3
3,478,417	+		PFLU_RS15535	0.83	-0.5
3,478,498	+		PFLU_RS15535	0.89	+0.6
3,478,499	-		PFLU_RS15535	0.90	-0.3
3,478,499	-		PFLU_RS15535	0.90	-0.8
3,478,513	+				+0.8
3,478,563	+				+0.3
3,478,563	+				-3.2
3,478,564	-				-0.8
3,478,621	+				+0.4
3,478,622	-				-1.5
3,478,673	+				+0.9
3,478,674	-				+0.8
3,478,674	-				+1.7
3,478,674	-				-1.4
3,478,677	+				-0.2
3,478,677	+				-0.2
3,478,678	-				+0.8
3,478,678	-				-1.1
3,478,678	-				-0.3
3,478,678	-				+0.0
3,478,702	+				+0.7
3,478,702	+				+0.8
3,478,703	-				+0.2
3,478,703	-				+0.5
3,478,745	-				+0.6
3,478,745	-				+0.3
3,478,766	+				-0.5
3,478,767	-				+0.2
3,478,767	-				+1.3
3,478,858	+		PFLU_RS15540	0.27	+1.3
3,478,859	-		PFLU_RS15540	0.27	+0.5
3,478,859	-		PFLU_RS15540	0.27	+1.1
3,478,859	-		PFLU_RS15540	0.27	+0.6
3,478,859	-		PFLU_RS15540	0.27	-1.3
3,478,859	-		PFLU_RS15540	0.27	-0.7
3,479,041	+		PFLU_RS15540	0.70	-1.1
3,479,041	+		PFLU_RS15540	0.70	-1.6
3,479,042	-		PFLU_RS15540	0.70	+1.7
3,479,042	-		PFLU_RS15540	0.70	-0.6
3,479,056	-		PFLU_RS15540	0.73	+0.6
3,479,095	-		PFLU_RS15540	0.83	+0.8
3,479,095	-		PFLU_RS15540	0.83	-0.8
3,479,095	-		PFLU_RS15540	0.83	-0.6
3,479,104	+		PFLU_RS15540	0.85	-1.7
3,479,118	-		PFLU_RS15540	0.88	+0.5
3,479,118	-		PFLU_RS15540	0.88	+0.3
3,479,118	-		PFLU_RS15540	0.88	-0.9
3,479,118	-		PFLU_RS15540	0.88	+1.3
3,479,131	+				+0.3
3,479,131	+				+0.3
3,479,131	+				+0.3
3,479,132	-				-1.6
3,479,132	-				-1.7
3,479,132	-				+0.7
3,479,132	-				+1.3
3,479,132	-				-1.1
3,479,132	-				-0.2
3,479,132	-				-0.2
3,479,253	+				-0.9
3,479,253	+				+0.0
3,479,253	+				+0.3
3,479,254	-				+0.9
3,479,254	-				-0.3
3,479,254	-				-0.6
3,479,315	+				+0.6
3,479,316	-				-1.6
3,479,334	-				-0.5
3,479,365	-		PFLU_RS30840	0.16	+2.3
3,479,365	-		PFLU_RS30840	0.16	+0.7
3,479,426	+		PFLU_RS30840	0.45	+0.1
3,479,426	+		PFLU_RS30840	0.45	+0.8
3,479,426	+		PFLU_RS30840	0.45	+0.1
3,479,426	+		PFLU_RS30840	0.45	-0.1
3,479,427	-		PFLU_RS30840	0.45	-0.7
3,479,427	-		PFLU_RS30840	0.45	+0.2
3,479,464	+		PFLU_RS30840	0.63	+0.3
3,479,464	+		PFLU_RS30840	0.63	+0.8
3,479,464	+		PFLU_RS30840	0.63	+0.9
3,479,465	-		PFLU_RS30840	0.63	-0.6
3,479,609	+				+0.7
3,479,609	+				+0.4
3,479,610	-				-0.6