Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28655

Experiment: L-Proline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Proline (C) 10 mM
6,375,721	+		PFLU_RS28645	0.87	-1.9
6,375,722	-		PFLU_RS28645	0.87	-1.1
6,375,722	-		PFLU_RS28645	0.87	-1.1
6,375,821	+				-1.0
6,375,828	-				-1.5
6,375,892	+				+0.8
6,375,941	+				-2.2
6,375,941	+				-0.5
6,375,941	+				-2.1
6,375,941	+				+0.9
6,375,941	+				+1.4
6,375,941	+				-0.3
6,375,941	+				+1.4
6,375,942	-				-2.0
6,375,942	-				-0.1
6,375,942	-				-0.4
6,375,942	-				+0.7
6,375,942	-				-0.4
6,375,942	-				-1.1
6,375,942	-				-1.0
6,375,942	-				+0.4
6,375,977	+				-0.6
6,375,977	+				-1.1
6,375,978	-				-2.3
6,375,978	-				-0.6
6,375,978	-				-2.0
6,376,004	+				-1.9
6,376,004	+				-0.8
6,376,004	+				+0.1
6,376,004	+				+0.4
6,376,005	-				-1.6
6,376,005	-				+0.7
6,376,048	+				-1.6
6,376,086	-		PFLU_RS28650	0.10	+0.1
6,376,130	+		PFLU_RS28650	0.20	-0.9
6,376,130	+		PFLU_RS28650	0.20	-0.7
6,376,130	+		PFLU_RS28650	0.20	+0.1
6,376,130	+		PFLU_RS28650	0.20	+0.4
6,376,130	+		PFLU_RS28650	0.20	+1.4
6,376,130	+		PFLU_RS28650	0.20	-0.2
6,376,130	+		PFLU_RS28650	0.20	+1.9
6,376,130	+		PFLU_RS28650	0.20	-0.9
6,376,131	-		PFLU_RS28650	0.20	+0.7
6,376,131	-		PFLU_RS28650	0.20	+2.0
6,376,131	-		PFLU_RS28650	0.20	+1.9
6,376,131	-		PFLU_RS28650	0.20	-0.0
6,376,131	-		PFLU_RS28650	0.20	+1.4
6,376,131	-		PFLU_RS28650	0.20	-0.0
6,376,131	-		PFLU_RS28650	0.20	+2.6
6,376,131	-		PFLU_RS28650	0.20	+3.0
6,376,321	+		PFLU_RS28650	0.59	-0.9
6,376,321	+		PFLU_RS28650	0.59	-2.3
6,376,321	+		PFLU_RS28650	0.59	+0.8
6,376,321	+		PFLU_RS28650	0.59	+0.4
6,376,321	+		PFLU_RS28650	0.59	+1.1
6,376,321	+		PFLU_RS28650	0.59	+0.8
6,376,321	+		PFLU_RS28650	0.59	+1.7
6,376,322	-		PFLU_RS28650	0.60	+0.7
6,376,322	-		PFLU_RS28650	0.60	+0.9
6,376,322	-		PFLU_RS28650	0.60	+1.1
6,376,364	+		PFLU_RS28650	0.68	+0.3
6,376,364	+		PFLU_RS28650	0.68	-1.3
6,376,365	-		PFLU_RS28650	0.69	+0.4
6,376,365	-		PFLU_RS28650	0.69	+1.4
6,376,365	-		PFLU_RS28650	0.69	+0.4
6,376,365	-		PFLU_RS28650	0.69	+0.4
6,376,447	+		PFLU_RS28650	0.86	-0.2
6,376,448	-		PFLU_RS28650	0.86	+0.4
6,376,448	-		PFLU_RS28650	0.86	-0.9
6,376,470	+				+1.8
6,376,470	+				+0.4
6,376,471	-				-0.3
6,376,471	-				+1.1
6,376,476	+				+2.7
6,376,476	+				-2.1
6,376,476	+				-0.6
6,376,476	+				-0.0
6,376,476	+				+1.8
6,376,477	-				+0.4
6,376,477	-				-0.9
6,376,477	-				+1.1
6,376,488	+				+0.4
6,376,488	+				-0.9
6,376,488	+				-0.3
6,376,488	+				+0.4
6,376,488	+				-0.8
6,376,489	-				+1.7
6,376,489	-				+3.0
6,376,489	-				-0.0
6,376,489	-				+2.1
6,376,586	+				+1.1
6,376,586	+				-1.1
6,376,586	+				-1.2
6,376,586	+				+0.5
6,376,586	+				+0.5
6,376,586	+				-0.1
6,376,586	+				-0.9
6,376,586	+				-0.4
6,376,586	+				+0.4
6,376,586	+				+0.5
6,376,586	+				+0.5
6,376,586	+				-1.1
6,376,586	+				-1.7
6,376,586	+				+0.2
6,376,586	+				-0.5
6,376,586	+				-2.1
6,376,586	+				-0.5
6,376,587	-				+0.1
6,376,587	-				+0.4
6,376,587	-				+0.2
6,376,587	-				-0.5
6,376,587	-				+0.1
6,376,587	-				-0.4
6,376,587	-				-0.4
6,376,587	-				-1.8
6,376,587	-				-0.5
6,376,587	-				+0.0
6,376,587	-				-0.5
6,376,587	-				+0.4
6,376,587	-				+1.2
6,376,587	-				-0.1
6,376,587	-				+0.7
6,376,587	-				+2.0
6,376,587	-				+0.1
6,376,587	-				-0.2
6,376,587	-				-1.2
6,376,591	+				-0.2
6,376,591	+				+0.0
6,376,591	+				-0.5
6,376,591	+				-0.6
6,376,591	+				-0.5
6,376,591	+				-0.1
6,376,591	+				-0.6
6,376,591	+				+2.1
6,376,591	+				+2.0
6,376,591	+				-0.3
6,376,591	+				-0.2
6,376,592	-				-1.2
6,376,592	-				-0.1
6,376,592	-				+0.3
6,376,592	-				+1.0
6,376,592	-				+1.7
6,376,592	-				+0.0
6,376,592	-				-0.6
6,376,592	-				+0.6
6,376,617	-				-1.0
6,376,634	-				+0.4
6,376,651	+				+1.3
6,376,651	+				+0.4
6,376,651	+				+1.0
6,376,651	+				-0.3
6,376,651	+				-1.4
6,376,673	-				-3.0
6,376,728	+		PFLU_RS28655	0.11	-1.2
6,376,728	+		PFLU_RS28655	0.11	-1.2
6,376,728	+		PFLU_RS28655	0.11	-2.9
6,376,728	+		PFLU_RS28655	0.11	-1.4
6,376,728	+		PFLU_RS28655	0.11	-3.4
6,376,729	-		PFLU_RS28655	0.11	-1.6
6,376,729	-		PFLU_RS28655	0.11	+0.4
6,376,729	-		PFLU_RS28655	0.11	+1.4
6,376,729	-		PFLU_RS28655	0.11	+0.1
6,376,729	-		PFLU_RS28655	0.11	-2.3
6,376,729	-		PFLU_RS28655	0.11	-0.9
6,376,732	+		PFLU_RS28655	0.11	-3.1
6,376,732	+		PFLU_RS28655	0.11	-2.2
6,376,732	+		PFLU_RS28655	0.11	-0.6
6,376,732	+		PFLU_RS28655	0.11	-1.6
6,376,732	+		PFLU_RS28655	0.11	-0.2
6,376,732	+		PFLU_RS28655	0.11	-2.9
6,376,732	+		PFLU_RS28655	0.11	-2.3
6,376,732	+		PFLU_RS28655	0.11	-0.9
6,376,732	+		PFLU_RS28655	0.11	-1.2
6,376,732	+		PFLU_RS28655	0.11	-1.8
6,376,732	+		PFLU_RS28655	0.11	-2.1
6,376,732	+		PFLU_RS28655	0.11	-2.9
6,376,732	+		PFLU_RS28655	0.11	-0.9
6,376,732	+		PFLU_RS28655	0.11	-1.1
6,376,732	+		PFLU_RS28655	0.11	-1.5
6,376,732	+		PFLU_RS28655	0.11	-2.1
6,376,732	+		PFLU_RS28655	0.11	-3.4
6,376,732	+		PFLU_RS28655	0.11	-1.6
6,376,732	+		PFLU_RS28655	0.11	-1.4
6,376,732	+		PFLU_RS28655	0.11	-1.5
6,376,732	+		PFLU_RS28655	0.11	-1.9
6,376,732	+		PFLU_RS28655	0.11	-0.9
6,376,732	+		PFLU_RS28655	0.11	-4.0
6,376,733	-		PFLU_RS28655	0.11	-1.4
6,376,733	-		PFLU_RS28655	0.11	-0.7
6,376,733	-		PFLU_RS28655	0.11	-1.8
6,376,733	-		PFLU_RS28655	0.11	-0.9
6,376,733	-		PFLU_RS28655	0.11	-0.2
6,376,733	-		PFLU_RS28655	0.11	-0.6
6,376,733	-		PFLU_RS28655	0.11	-2.7
6,376,733	-		PFLU_RS28655	0.11	-2.4
6,376,733	-		PFLU_RS28655	0.11	-2.3
6,376,733	-		PFLU_RS28655	0.11	-1.9
6,376,733	-		PFLU_RS28655	0.11	+0.4
6,376,733	-		PFLU_RS28655	0.11	-2.8
6,376,764	+		PFLU_RS28655	0.16	-1.4
6,376,764	+		PFLU_RS28655	0.16	+1.4
6,376,764	+		PFLU_RS28655	0.16	-2.5
6,376,764	+		PFLU_RS28655	0.16	-4.3
6,376,764	+		PFLU_RS28655	0.16	-0.2
6,376,764	+		PFLU_RS28655	0.16	-2.4
6,376,765	-		PFLU_RS28655	0.16	-0.6
6,376,765	-		PFLU_RS28655	0.16	-1.4
6,376,765	-		PFLU_RS28655	0.16	-1.2
6,376,765	-		PFLU_RS28655	0.16	-1.9
6,376,765	-		PFLU_RS28655	0.16	+1.4
6,376,765	-		PFLU_RS28655	0.16	-0.2
6,376,765	-		PFLU_RS28655	0.16	-2.8
6,376,765	-		PFLU_RS28655	0.16	-2.2
6,376,765	-		PFLU_RS28655	0.16	-0.2
6,376,788	+		PFLU_RS28655	0.20	-1.4
6,376,788	+		PFLU_RS28655	0.20	-2.8
6,376,788	+		PFLU_RS28655	0.20	-1.5
6,376,789	-		PFLU_RS28655	0.20	-2.5
6,376,789	-		PFLU_RS28655	0.20	+0.4
6,376,789	-		PFLU_RS28655	0.20	-2.3
6,376,797	+		PFLU_RS28655	0.21	-0.2
6,376,797	+		PFLU_RS28655	0.21	-1.0
6,376,797	+		PFLU_RS28655	0.21	-2.4
6,376,797	+		PFLU_RS28655	0.21	-0.2
6,376,797	+		PFLU_RS28655	0.21	-2.2
6,376,798	-		PFLU_RS28655	0.21	+1.4
6,376,798	-		PFLU_RS28655	0.21	-1.4
6,376,798	-		PFLU_RS28655	0.21	-1.9
6,376,827	+		PFLU_RS28655	0.26	-1.6
6,376,828	-		PFLU_RS28655	0.26	-2.7
6,376,896	+		PFLU_RS28655	0.36	-3.4
6,376,896	+		PFLU_RS28655	0.36	-1.2
6,376,896	+		PFLU_RS28655	0.36	-3.3
6,376,896	+		PFLU_RS28655	0.36	-1.8
6,376,896	+		PFLU_RS28655	0.36	+1.4
6,376,896	+		PFLU_RS28655	0.36	-1.4
6,376,896	+		PFLU_RS28655	0.36	-1.3
6,376,896	+		PFLU_RS28655	0.36	-2.5
6,376,896	+		PFLU_RS28655	0.36	-0.9
6,376,896	+		PFLU_RS28655	0.36	-2.2
6,376,896	+		PFLU_RS28655	0.36	-1.3
6,376,896	+		PFLU_RS28655	0.36	-2.6
6,376,896	+		PFLU_RS28655	0.36	-0.6
6,376,897	-		PFLU_RS28655	0.36	-0.9
6,376,897	-		PFLU_RS28655	0.36	-1.2
6,376,897	-		PFLU_RS28655	0.36	-1.2
6,376,897	-		PFLU_RS28655	0.36	-1.3
6,376,897	-		PFLU_RS28655	0.36	-0.8
6,376,897	-		PFLU_RS28655	0.36	+0.4
6,376,897	-		PFLU_RS28655	0.36	-1.8
6,376,897	-		PFLU_RS28655	0.36	-1.8
6,376,897	-		PFLU_RS28655	0.36	-3.3
6,376,897	-		PFLU_RS28655	0.36	-0.2
6,376,897	-		PFLU_RS28655	0.36	+1.1
6,376,897	-		PFLU_RS28655	0.36	-2.5
6,376,897	-		PFLU_RS28655	0.36	-1.2
6,376,897	-		PFLU_RS28655	0.36	-1.6
6,376,897	-		PFLU_RS28655	0.36	-2.2
6,376,897	-		PFLU_RS28655	0.36	-1.9
6,376,897	-		PFLU_RS28655	0.36	-0.8
6,376,898	+		PFLU_RS28655	0.36	-0.7
6,376,898	+		PFLU_RS28655	0.36	-2.2
6,376,898	+		PFLU_RS28655	0.36	-0.6
6,376,898	+		PFLU_RS28655	0.36	-2.2
6,376,898	+		PFLU_RS28655	0.36	-1.4
6,376,898	+		PFLU_RS28655	0.36	-1.6
6,376,898	+		PFLU_RS28655	0.36	-2.9
6,376,898	+		PFLU_RS28655	0.36	-1.6
6,376,898	+		PFLU_RS28655	0.36	-1.9
6,376,898	+		PFLU_RS28655	0.36	-2.4
6,376,898	+		PFLU_RS28655	0.36	-3.6
6,376,898	+		PFLU_RS28655	0.36	+0.2
6,376,898	+		PFLU_RS28655	0.36	-2.4
6,376,898	+		PFLU_RS28655	0.36	-1.8
6,376,899	-		PFLU_RS28655	0.37	-2.1
6,376,899	-		PFLU_RS28655	0.37	-0.4
6,376,899	-		PFLU_RS28655	0.37	-1.1
6,376,899	-		PFLU_RS28655	0.37	-2.9
6,376,899	-		PFLU_RS28655	0.37	-0.9
6,376,899	-		PFLU_RS28655	0.37	-0.8
6,377,082	+		PFLU_RS28655	0.64	-2.5
6,377,083	-		PFLU_RS28655	0.65	-1.4
6,377,104	+		PFLU_RS28655	0.68	-0.2
6,377,104	+		PFLU_RS28655	0.68	-1.9
6,377,104	+		PFLU_RS28655	0.68	-3.7
6,377,104	+		PFLU_RS28655	0.68	-2.6
6,377,105	-		PFLU_RS28655	0.68	-1.9
6,377,105	-		PFLU_RS28655	0.68	-1.9
6,377,105	-		PFLU_RS28655	0.68	-0.2
6,377,163	+		PFLU_RS28655	0.77	-0.6
6,377,181	+		PFLU_RS28655	0.79	-1.8
6,377,181	+		PFLU_RS28655	0.79	-2.4
6,377,181	+		PFLU_RS28655	0.79	-2.9
6,377,181	+		PFLU_RS28655	0.79	-1.4
6,377,181	+		PFLU_RS28655	0.79	+0.8
6,377,181	+		PFLU_RS28655	0.79	-1.3
6,377,181	+		PFLU_RS28655	0.79	-1.2
6,377,181	+		PFLU_RS28655	0.79	+1.4
6,377,181	+		PFLU_RS28655	0.79	-2.4
6,377,182	-		PFLU_RS28655	0.80	+0.4
6,377,182	-		PFLU_RS28655	0.80	-0.7
6,377,187	+		PFLU_RS28655	0.80	-0.6
6,377,187	+		PFLU_RS28655	0.80	-1.8
6,377,300	+				-2.6
6,377,300	+				-0.9
6,377,300	+				-0.8
6,377,300	+				-1.4
6,377,300	+				-0.0
6,377,300	+				-2.5
6,377,300	+				-1.9
6,377,300	+				+1.0
6,377,300	+				-2.3
6,377,301	-				-3.1
6,377,301	-				-0.5
6,377,301	-				-2.7
6,377,301	-				-2.5
6,377,301	-				-0.9
6,377,301	-				-1.6
6,377,301	-				-1.5
6,377,301	-				-0.4
6,377,411	+				+0.9
6,377,411	+				-1.8
6,377,505	-		PFLU_RS28660	0.21	-0.3
6,377,531	+		PFLU_RS28660	0.27	-0.3
6,377,532	-		PFLU_RS28660	0.28	-0.6
6,377,573	+		PFLU_RS28660	0.37	+1.0
6,377,573	+		PFLU_RS28660	0.37	-0.2
6,377,574	-		PFLU_RS28660	0.38	+1.5
6,377,574	-		PFLU_RS28660	0.38	-0.1
6,377,574	-		PFLU_RS28660	0.38	+0.1
6,377,575	+		PFLU_RS28660	0.38	+0.5
6,377,575	+		PFLU_RS28660	0.38	+0.2
6,377,575	+		PFLU_RS28660	0.38	+0.4
6,377,575	+		PFLU_RS28660	0.38	+1.5
6,377,575	+		PFLU_RS28660	0.38	-0.2
6,377,575	+		PFLU_RS28660	0.38	-2.1
6,377,575	+		PFLU_RS28660	0.38	-1.1
6,377,575	+		PFLU_RS28660	0.38	+0.6
6,377,575	+		PFLU_RS28660	0.38	-0.9
6,377,575	+		PFLU_RS28660	0.38	-0.3
6,377,575	+		PFLU_RS28660	0.38	-1.4
6,377,575	+		PFLU_RS28660	0.38	+0.5
6,377,575	+		PFLU_RS28660	0.38	+0.0
6,377,575	+		PFLU_RS28660	0.38	-1.2
6,377,576	-		PFLU_RS28660	0.38	-0.9
6,377,576	-		PFLU_RS28660	0.38	+1.8
6,377,576	-		PFLU_RS28660	0.38	-0.1
6,377,576	-		PFLU_RS28660	0.38	+1.7
6,377,804	+				+1.2
6,377,816	+				+1.4
6,377,816	+				-0.2
6,377,816	+				-0.1
6,377,816	+				+0.4
6,377,816	+				+0.9
6,377,817	-				-1.1
6,377,817	-				+0.1
6,377,817	-				+0.3
6,377,845	+				+0.5
6,377,865	+				+2.4
6,377,865	+				-0.8
6,377,866	-				+0.7
6,377,866	-				-0.8
6,377,891	+				+0.4
6,377,891	+				-0.3
6,377,891	+				+0.1
6,377,891	+				-0.5
6,377,892	-				-0.7
6,377,892	-				+0.7
6,377,892	-				+0.5
6,377,892	-				-1.6
6,377,918	+				-0.2
6,377,919	-				-0.2
6,378,023	+				-0.0
6,378,063	+		PFLU_RS28665	0.13	-1.1
6,378,153	+		PFLU_RS28665	0.19	-1.4
6,378,153	+		PFLU_RS28665	0.19	+1.7
6,378,153	+		PFLU_RS28665	0.19	+1.2
6,378,153	+		PFLU_RS28665	0.19	+0.4
6,378,153	+		PFLU_RS28665	0.19	+0.6
6,378,153	+		PFLU_RS28665	0.19	+0.8
6,378,154	-		PFLU_RS28665	0.19	-0.4
6,378,154	-		PFLU_RS28665	0.19	-0.9
6,378,311	+		PFLU_RS28665	0.29	+0.8
6,378,311	+		PFLU_RS28665	0.29	-1.1
6,378,311	+		PFLU_RS28665	0.29	+0.5
6,378,311	+		PFLU_RS28665	0.29	+1.9
6,378,311	+		PFLU_RS28665	0.29	-1.8
6,378,312	-		PFLU_RS28665	0.29	+1.0
6,378,312	-		PFLU_RS28665	0.29	+1.7
6,378,312	-		PFLU_RS28665	0.29	+0.9
6,378,312	-		PFLU_RS28665	0.29	+0.1