Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21980

Experiment: L-Proline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Proline (C) 10 mM
4,947,625	+		PFLU_RS21975	0.25	-0.1
4,947,625	+		PFLU_RS21975	0.25	+0.4
4,947,625	+		PFLU_RS21975	0.25	-0.7
4,947,625	+		PFLU_RS21975	0.25	+1.6
4,947,625	+		PFLU_RS21975	0.25	-0.1
4,947,626	-		PFLU_RS21975	0.25	+1.5
4,947,626	-		PFLU_RS21975	0.25	-0.8
4,947,626	-		PFLU_RS21975	0.25	+0.1
4,947,688	+		PFLU_RS21975	0.30	-1.0
4,947,688	+		PFLU_RS21975	0.30	-0.7
4,947,688	+		PFLU_RS21975	0.30	-1.0
4,947,689	-		PFLU_RS21975	0.30	+0.4
4,947,689	-		PFLU_RS21975	0.30	-0.8
4,947,689	-		PFLU_RS21975	0.30	+0.6
4,947,689	-		PFLU_RS21975	0.30	+0.1
4,947,689	-		PFLU_RS21975	0.30	+0.2
4,947,689	-		PFLU_RS21975	0.30	-0.2
4,947,745	+		PFLU_RS21975	0.35	-2.0
4,947,745	+		PFLU_RS21975	0.35	+0.4
4,947,745	+		PFLU_RS21975	0.35	+0.6
4,947,745	+		PFLU_RS21975	0.35	+0.7
4,947,745	+		PFLU_RS21975	0.35	-0.7
4,947,746	-		PFLU_RS21975	0.35	-0.6
4,947,746	-		PFLU_RS21975	0.35	-0.7
4,947,746	-		PFLU_RS21975	0.35	-0.8
4,947,746	-		PFLU_RS21975	0.35	-0.3
4,947,746	-		PFLU_RS21975	0.35	+0.5
4,947,746	-		PFLU_RS21975	0.35	+1.1
4,947,758	+		PFLU_RS21975	0.36	+1.0
4,947,758	+		PFLU_RS21975	0.36	-1.0
4,947,758	+		PFLU_RS21975	0.36	+3.6
4,947,759	-		PFLU_RS21975	0.36	-0.1
4,947,759	-		PFLU_RS21975	0.36	+0.4
4,947,827	-		PFLU_RS21975	0.41	-0.3
4,947,827	-		PFLU_RS21975	0.41	+0.4
4,948,206	-		PFLU_RS21975	0.73	+0.8
4,948,282	+		PFLU_RS21975	0.79	+0.4
4,948,367	+		PFLU_RS21975	0.86	-0.2
4,948,367	+		PFLU_RS21975	0.86	+0.8
4,948,367	+		PFLU_RS21975	0.86	+0.5
4,948,367	+		PFLU_RS21975	0.86	-0.7
4,948,367	+		PFLU_RS21975	0.86	-0.1
4,948,367	+		PFLU_RS21975	0.86	+0.7
4,948,368	-		PFLU_RS21975	0.86	+1.8
4,948,368	-		PFLU_RS21975	0.86	+1.9
4,948,368	-		PFLU_RS21975	0.86	+1.3
4,948,368	-		PFLU_RS21975	0.86	+0.5
4,948,540	+				+0.3
4,948,540	+				-0.8
4,948,558	-				-0.9
4,948,559	+				-1.1
4,948,560	-				+3.3
4,948,562	-				+0.8
4,948,570	-				+0.6
4,948,570	-				+0.0
4,948,572	-				-1.2
4,948,572	-				-0.2
4,948,888	+		PFLU_RS21980	0.74	-0.6
4,948,888	+		PFLU_RS21980	0.74	+0.5
4,948,888	+		PFLU_RS21980	0.74	+0.3
4,948,888	+		PFLU_RS21980	0.74	-1.7
4,948,889	-		PFLU_RS21980	0.74	-2.6
4,948,889	-		PFLU_RS21980	0.74	-0.3
4,948,889	-		PFLU_RS21980	0.74	-0.4
4,948,930	+		PFLU_RS21980	0.84	+0.2
4,948,931	-		PFLU_RS21980	0.84	-0.4
4,948,931	-		PFLU_RS21980	0.84	-1.0
4,948,931	-		PFLU_RS21980	0.84	+0.1
4,948,931	-		PFLU_RS21980	0.84	-1.7
4,948,970	+				-1.0
4,948,970	+				-0.6
4,948,970	+				+0.2
4,948,970	+				+0.6
4,948,970	+				-0.5
4,948,970	+				-1.2
4,948,970	+				-0.7
4,948,970	+				-0.3
4,948,970	+				-1.2
4,948,970	+				-1.3
4,948,970	+				+0.0
4,948,970	+				-0.2
4,948,970	+				-0.8
4,948,970	+				-2.1
4,948,970	+				-1.5
4,948,970	+				-2.5
4,948,970	+				+0.1
4,948,971	-				-0.6
4,948,971	-				+0.3
4,948,971	-				+0.3
4,948,971	-				+0.0
4,948,971	-				+0.1
4,948,971	-				-1.4
4,948,971	-				+0.7
4,948,971	-				-0.5
4,948,971	-				-0.2
4,948,971	-				+0.4
4,948,971	-				+0.3
4,948,971	-				+0.9
4,948,971	-				+0.5
4,948,971	-				+0.7
4,948,971	-				-2.4
4,948,974	+				+0.8
4,948,974	+				-0.9
4,948,974	+				-1.5
4,948,974	+				+0.3
4,948,974	+				-0.3
4,948,974	+				-1.4
4,948,974	+				-1.8
4,948,974	+				-0.7
4,948,974	+				+0.8
4,948,974	+				-1.3
4,948,974	+				-1.0
4,948,975	-				-0.3
4,948,975	-				-0.4
4,948,975	-				-0.3
4,948,975	-				+0.9
4,948,975	-				-1.3
4,948,975	-				+3.2
4,948,975	-				-2.2
4,948,975	-				+1.0
4,948,975	-				-0.7
4,948,975	-				+0.1
4,948,975	-				-0.4
4,948,975	-				+0.8
4,948,975	-				+0.3
4,948,975	-				-1.0
4,948,975	-				-0.0
4,949,003	+				-0.0
4,949,003	+				-2.0
4,949,003	+				-0.3
4,949,003	+				+0.4
4,949,003	+				-1.6
4,949,003	+				+1.6
4,949,004	-				-2.2
4,949,004	-				-0.6
4,949,004	-				-0.7
4,949,004	-				+1.3
4,949,004	-				-1.2
4,949,005	+				+0.5
4,949,005	+				+0.7
4,949,005	+				-0.2
4,949,006	-				+1.1
4,949,006	-				+0.8
4,949,006	-				+0.4
4,949,006	-				+2.9
4,949,006	-				-0.9
4,949,006	-				+0.1
4,949,039	-				+1.4
4,949,039	-				-0.6
4,949,253	+		PFLU_RS21985	0.30	+0.5
4,949,253	+		PFLU_RS21985	0.30	+1.3
4,949,254	-		PFLU_RS21985	0.30	+1.0
4,949,254	-		PFLU_RS21985	0.30	-0.3
4,949,254	-		PFLU_RS21985	0.30	-0.1
4,949,296	+		PFLU_RS21985	0.36	+1.6
4,949,296	+		PFLU_RS21985	0.36	-0.3
4,949,296	+		PFLU_RS21985	0.36	+2.1
4,949,296	+		PFLU_RS21985	0.36	-1.8
4,949,296	+		PFLU_RS21985	0.36	-0.4
4,949,296	+		PFLU_RS21985	0.36	-0.7
4,949,297	-		PFLU_RS21985	0.36	+2.3
4,949,665	+		PFLU_RS21985	0.86	-0.2
4,949,843	+		PFLU_RS21990	0.13	+1.3
4,949,844	-		PFLU_RS21990	0.13	+1.5
4,949,844	-		PFLU_RS21990	0.13	+0.7
4,949,882	+		PFLU_RS21990	0.20	-1.8
4,949,882	+		PFLU_RS21990	0.20	+1.3
4,949,882	+		PFLU_RS21990	0.20	-3.0
4,949,882	+		PFLU_RS21990	0.20	-1.0
4,949,882	+		PFLU_RS21990	0.20	+0.9
4,949,883	-		PFLU_RS21990	0.20	-1.3
4,949,934	+		PFLU_RS21990	0.29	+0.5
4,949,934	+		PFLU_RS21990	0.29	-0.8
4,949,935	-		PFLU_RS21990	0.29	-0.0
4,949,935	-		PFLU_RS21990	0.29	-0.5
4,949,935	-		PFLU_RS21990	0.29	-0.1
4,949,935	-		PFLU_RS21990	0.29	-1.2
4,949,945	+		PFLU_RS21990	0.31	-1.0
4,949,945	+		PFLU_RS21990	0.31	+2.9
4,949,945	+		PFLU_RS21990	0.31	-1.5
4,949,945	+		PFLU_RS21990	0.31	+0.3
4,949,945	+		PFLU_RS21990	0.31	+1.3
4,949,945	+		PFLU_RS21990	0.31	-0.3
4,949,945	+		PFLU_RS21990	0.31	-0.4
4,949,945	+		PFLU_RS21990	0.31	+1.8
4,949,945	+		PFLU_RS21990	0.31	-1.3
4,949,946	-		PFLU_RS21990	0.31	-0.5
4,949,946	-		PFLU_RS21990	0.31	-0.5
4,949,946	-		PFLU_RS21990	0.31	+0.3
4,949,946	-		PFLU_RS21990	0.31	-2.2
4,949,946	-		PFLU_RS21990	0.31	+0.0
4,949,946	-		PFLU_RS21990	0.31	+0.1
4,949,946	-		PFLU_RS21990	0.31	-0.3
4,949,946	-		PFLU_RS21990	0.31	+0.3
4,949,946	-		PFLU_RS21990	0.31	+0.5
4,949,946	-		PFLU_RS21990	0.31	-0.1