Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11105

Experiment: L-Proline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Proline (C) 10 mM
2,448,195	-				+2.0
2,448,196	+				-0.2
2,448,196	+				-0.2
2,448,196	+				+1.2
2,448,196	+				+0.3
2,448,196	+				-0.2
2,448,196	+				+0.3
2,448,196	+				-1.0
2,448,203	+				+1.1
2,448,203	+				-0.9
2,448,203	+				+1.9
2,448,242	-				+0.2
2,448,242	-				+0.2
2,448,245	+				+0.2
2,448,246	-				-0.2
2,448,246	-				+0.9
2,448,253	-				+0.2
2,448,270	+				+0.2
2,448,270	+				-1.4
2,448,270	+				-0.0
2,448,271	-				-1.6
2,448,271	-				-0.2
2,448,312	+		PFLU_RS11100	0.15	+0.2
2,448,313	-		PFLU_RS11100	0.16	+1.6
2,448,313	-		PFLU_RS11100	0.16	+0.4
2,448,313	-		PFLU_RS11100	0.16	-0.9
2,448,313	-		PFLU_RS11100	0.16	-0.3
2,448,396	+		PFLU_RS11100	0.36	+0.8
2,448,396	+		PFLU_RS11100	0.36	-2.4
2,448,397	-		PFLU_RS11100	0.37	+1.1
2,448,397	-		PFLU_RS11100	0.37	+0.3
2,448,397	-		PFLU_RS11100	0.37	-0.7
2,448,397	-		PFLU_RS11100	0.37	+0.7
2,448,425	+		PFLU_RS11100	0.44	+1.4
2,448,468	-		PFLU_RS11100	0.55	+1.1
2,448,468	-		PFLU_RS11100	0.55	-1.6
2,448,478	+		PFLU_RS11100	0.57	-0.2
2,448,478	+		PFLU_RS11100	0.57	+1.2
2,448,479	-		PFLU_RS11100	0.57	-0.4
2,448,558	+		PFLU_RS11100	0.77	+0.4
2,448,559	-		PFLU_RS11100	0.77	-2.0
2,448,785	+				+0.2
2,448,791	+				-1.2
2,448,791	+				+0.5
2,448,792	-				+1.1
2,448,792	-				+0.1
2,448,796	+				+0.0
2,448,796	+				-0.6
2,448,797	-				-1.4
2,448,797	-				-0.8
2,448,797	-				-1.9
2,448,826	+				+0.3
2,448,840	+				-0.6
2,448,840	+				+0.0
2,448,840	+				-0.0
2,448,840	+				-1.6
2,448,840	+				-0.8
2,448,840	+				+1.1
2,448,841	-				+1.2
2,448,841	-				+1.2
2,448,841	-				+0.6
2,448,841	-				+0.3
2,448,841	-				-0.2
2,448,841	-				-1.4
2,448,841	-				+1.4
2,448,841	-				-1.0
2,448,851	+				+1.2
2,448,852	-				+0.9
2,448,895	-				-0.8
2,448,950	-		PFLU_RS31545	0.21	+0.3
2,448,994	+		PFLU_RS31545	0.57	+0.2
2,448,994	+		PFLU_RS31545	0.57	-1.4
2,448,995	-		PFLU_RS31545	0.58	-0.2
2,448,995	-		PFLU_RS31545	0.58	-0.6
2,449,029	-		PFLU_RS31545	0.87	+0.7
2,449,130	+				+1.0
2,449,130	+				-0.3
2,449,130	+				-0.3
2,449,130	+				-0.1
2,449,130	+				+0.5
2,449,130	+				-1.0
2,449,131	-				+0.2
2,449,131	-				+0.7
2,449,131	-				+0.2
2,449,131	-				-0.4
2,449,131	-				+0.2
2,449,206	+				-0.1
2,449,206	+				-0.4
2,449,206	+				-1.7
2,449,206	+				+0.6
2,449,207	-				+0.7
2,449,207	-				-1.4
2,449,240	-		PFLU_RS11105	0.11	+0.8
2,449,240	-		PFLU_RS11105	0.11	+0.6
2,449,240	-		PFLU_RS11105	0.11	-0.8
2,449,329	+		PFLU_RS11105	0.33	+0.2
2,449,329	+		PFLU_RS11105	0.33	-1.8
2,449,329	+		PFLU_RS11105	0.33	-1.4
2,449,329	+		PFLU_RS11105	0.33	-0.6
2,449,329	+		PFLU_RS11105	0.33	-0.4
2,449,329	+		PFLU_RS11105	0.33	-0.8
2,449,330	-		PFLU_RS11105	0.34	+0.4
2,449,330	-		PFLU_RS11105	0.34	-0.1
2,449,330	-		PFLU_RS11105	0.34	-0.4
2,449,330	-		PFLU_RS11105	0.34	-1.0
2,449,624	+				-1.2
2,449,624	+				+0.3
2,449,624	+				-0.9
2,449,625	-				-0.1
2,449,686	+				+2.5
2,449,686	+				+0.9
2,449,686	+				+0.0
2,449,687	-				+0.8
2,449,687	-				-0.7
2,449,687	-				+1.6
2,449,687	-				-0.4
2,449,687	-				+0.5
2,449,729	-		PFLU_RS31550	0.42	+0.4
2,449,792	+				-0.4
2,449,793	-				+1.5
2,449,947	+				-1.9
2,449,947	+				-0.4
2,449,947	+				-0.8
2,449,948	-		PFLU_RS11110	0.10	+0.2
2,449,948	-		PFLU_RS11110	0.10	+0.2
2,449,973	-		PFLU_RS11110	0.14	-0.8
2,450,017	-		PFLU_RS11110	0.21	+0.5
2,450,119	-		PFLU_RS11110	0.37	-0.4
2,450,140	+		PFLU_RS11110	0.41	+0.1
2,450,140	+		PFLU_RS11110	0.41	-1.2
2,450,140	+		PFLU_RS11110	0.41	+0.8
2,450,140	+		PFLU_RS11110	0.41	+0.0
2,450,141	-		PFLU_RS11110	0.41	-0.1
2,450,141	-		PFLU_RS11110	0.41	+1.6
2,450,141	-		PFLU_RS11110	0.41	+0.2
2,450,157	+		PFLU_RS11110	0.43	-0.5
2,450,157	+		PFLU_RS11110	0.43	-1.2
2,450,157	+		PFLU_RS11110	0.43	-1.6
2,450,158	-		PFLU_RS11110	0.44	-0.4
2,450,158	-		PFLU_RS11110	0.44	+1.5
2,450,199	-		PFLU_RS11110	0.50	+0.6
2,450,199	-		PFLU_RS11110	0.50	-1.1
2,450,203	+		PFLU_RS11110	0.51	-0.4
2,450,203	+		PFLU_RS11110	0.51	-0.4
2,450,203	+		PFLU_RS11110	0.51	+0.8
2,450,203	+		PFLU_RS11110	0.51	-0.5
2,450,203	+		PFLU_RS11110	0.51	+0.6
2,450,203	+		PFLU_RS11110	0.51	+0.6
2,450,203	+		PFLU_RS11110	0.51	-0.1
2,450,203	+		PFLU_RS11110	0.51	-0.7
2,450,204	-		PFLU_RS11110	0.51	-0.5
2,450,204	-		PFLU_RS11110	0.51	-0.4
2,450,204	-		PFLU_RS11110	0.51	+1.0
2,450,204	-		PFLU_RS11110	0.51	+0.1
2,450,204	-		PFLU_RS11110	0.51	-0.7
2,450,205	+		PFLU_RS11110	0.51	+2.8
2,450,205	+		PFLU_RS11110	0.51	-0.4
2,450,205	+		PFLU_RS11110	0.51	+0.3
2,450,205	+		PFLU_RS11110	0.51	-0.3
2,450,205	+		PFLU_RS11110	0.51	-0.4
2,450,205	+		PFLU_RS11110	0.51	+0.5
2,450,205	+		PFLU_RS11110	0.51	-0.6
2,450,206	-		PFLU_RS11110	0.51	-2.1
2,450,206	-		PFLU_RS11110	0.51	-0.4
2,450,206	-		PFLU_RS11110	0.51	-0.4
2,450,206	-		PFLU_RS11110	0.51	+0.6
2,450,206	-		PFLU_RS11110	0.51	+2.8
2,450,229	+		PFLU_RS11110	0.55	+0.4
2,450,229	+		PFLU_RS11110	0.55	+1.0
2,450,230	-		PFLU_RS11110	0.55	-0.5
2,450,269	+		PFLU_RS11110	0.61	+1.6
2,450,270	-		PFLU_RS11110	0.61	-0.8
2,450,338	+		PFLU_RS11110	0.72	+0.9
2,450,338	+		PFLU_RS11110	0.72	+0.1
2,450,339	-		PFLU_RS11110	0.72	-0.4
2,450,401	+		PFLU_RS11110	0.82	-0.2
2,450,401	+		PFLU_RS11110	0.82	-0.6
2,450,401	+		PFLU_RS11110	0.82	-1.2
2,450,402	-		PFLU_RS11110	0.82	+0.3
2,450,402	-		PFLU_RS11110	0.82	+1.2
2,450,402	-		PFLU_RS11110	0.82	-0.4
2,450,403	+		PFLU_RS11110	0.83	-1.0
2,450,403	+		PFLU_RS11110	0.83	+0.2
2,450,403	+		PFLU_RS11110	0.83	-1.0
2,450,404	-		PFLU_RS11110	0.83	+0.1
2,450,404	-		PFLU_RS11110	0.83	-0.6
2,450,404	-		PFLU_RS11110	0.83	-0.1
2,450,404	-		PFLU_RS11110	0.83	+0.2
2,450,404	-		PFLU_RS11110	0.83	+1.2
2,450,415	+		PFLU_RS11110	0.85	-0.8
2,450,415	+		PFLU_RS11110	0.85	-0.3
2,450,415	+		PFLU_RS11110	0.85	+0.5
2,450,415	+		PFLU_RS11110	0.85	+0.5
2,450,415	+		PFLU_RS11110	0.85	+0.6
2,450,416	-		PFLU_RS11110	0.85	-1.4
2,450,416	-		PFLU_RS11110	0.85	+1.2
2,450,416	-		PFLU_RS11110	0.85	-0.4
2,450,416	-		PFLU_RS11110	0.85	-0.0
2,450,416	-		PFLU_RS11110	0.85	-2.6
2,450,416	-		PFLU_RS11110	0.85	-1.8
2,450,416	-		PFLU_RS11110	0.85	-0.5
2,450,510	-				+0.6
2,450,554	-				-1.4
2,450,587	+				-1.0
2,450,587	+				+0.6
2,450,587	+				+2.0
2,450,588	-				+0.9
2,450,590	+				-0.1
2,450,591	-				+0.5
2,450,591	-				-0.2
2,450,591	-				+1.2
2,450,591	-				+0.3
2,450,591	-				-1.4
2,450,591	-				+2.6