Experiment: NoPhage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0602 and BT0603 are separated by 143 nucleotides BT0603 and BT0604 are separated by 1 nucleotides
BT0602: BT0602 - UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file), at 742,944 to 744,167
BT0602
BT0603: BT0603 - conserved hypothetical protein (NCBI ptt file), at 744,311 to 745,423
BT0603
BT0604: BT0604 - putative coenzyme F420-reducing hydrogenase (NCBI ptt file), at 745,425 to 746,612
BT0604
Position (kb) 744
745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 743.366 kb on - strand, within BT0602 at 743.481 kb on + strand, within BT0602 at 743.482 kb on - strand, within BT0602 at 743.573 kb on + strand, within BT0602 at 743.622 kb on - strand, within BT0602 at 743.843 kb on + strand, within BT0602 at 743.954 kb on - strand, within BT0602 at 743.973 kb on + strand, within BT0602 at 744.166 kb on - strand at 744.283 kb on - strand at 744.335 kb on + strand at 744.337 kb on + strand at 744.338 kb on - strand at 744.338 kb on - strand at 744.370 kb on - strand at 744.563 kb on - strand, within BT0603 at 744.631 kb on + strand, within BT0603 at 744.789 kb on + strand, within BT0603 at 744.889 kb on - strand, within BT0603 at 744.943 kb on + strand, within BT0603 at 745.202 kb on + strand, within BT0603 at 745.222 kb on + strand, within BT0603 at 745.325 kb on + strand at 745.452 kb on - strand at 745.477 kb on + strand at 745.478 kb on - strand at 745.547 kb on + strand, within BT0604 at 745.547 kb on + strand, within BT0604 at 745.570 kb on + strand, within BT0604 at 745.626 kb on - strand, within BT0604 at 745.664 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.683 kb on - strand, within BT0604 at 745.833 kb on - strand, within BT0604 at 745.839 kb on - strand, within BT0604 at 745.860 kb on - strand, within BT0604 at 746.109 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhage remove 743,366 - BT0602 0.34 +2.0 743,481 + BT0602 0.44 -1.2 743,482 - BT0602 0.44 +0.6 743,573 + BT0602 0.51 +1.0 743,622 - BT0602 0.55 -3.0 743,843 + BT0602 0.73 -0.2 743,954 - BT0602 0.83 +2.1 743,973 + BT0602 0.84 +2.0 744,166 - -1.3 744,283 - -0.6 744,335 + +0.6 744,337 + -0.4 744,338 - +0.4 744,338 - +0.0 744,370 - -0.8 744,563 - BT0603 0.23 +1.0 744,631 + BT0603 0.29 +1.0 744,789 + BT0603 0.43 +2.0 744,889 - BT0603 0.52 -0.6 744,943 + BT0603 0.57 -0.3 745,202 + BT0603 0.80 +1.4 745,222 + BT0603 0.82 -0.3 745,325 + +2.2 745,452 - -0.2 745,477 + -1.0 745,478 - -3.3 745,547 + BT0604 0.10 -0.4 745,547 + BT0604 0.10 -1.0 745,570 + BT0604 0.12 -0.0 745,626 - BT0604 0.17 +1.0 745,664 + BT0604 0.20 -0.0 745,682 + BT0604 0.22 -0.2 745,682 + BT0604 0.22 -2.0 745,683 - BT0604 0.22 -2.0 745,833 - BT0604 0.34 -2.2 745,839 - BT0604 0.35 -1.3 745,860 - BT0604 0.37 -1.7 746,109 - BT0604 0.58 -0.4 746,167 - BT0604 0.62 +1.3 746,167 - BT0604 0.62 +2.6
Or see this region's nucleotide sequence