Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3279

Experiment: SJC12_cps8_0.1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SJC12_cps8_0.1MOI
4,190,623	+		BT3278	0.21	-0.9
4,190,648	-		BT3278	0.23	-2.4
4,190,729	+		BT3278	0.30	-3.6
4,190,729	+		BT3278	0.30	-1.2
4,190,736	-		BT3278	0.31	-1.7
4,190,823	-		BT3278	0.38	-1.7
4,190,934	-		BT3278	0.48	+1.5
4,190,934	-		BT3278	0.48	+0.2
4,190,994	+		BT3278	0.53	-0.9
4,190,999	+		BT3278	0.53	-1.5
4,191,008	-		BT3278	0.54	-0.9
4,191,048	+		BT3278	0.57	-1.0
4,191,154	+		BT3278	0.66	-1.2
4,191,154	+		BT3278	0.66	-2.5
4,191,159	-		BT3278	0.67	-1.5
4,191,219	-		BT3278	0.72	-1.9
4,191,242	-		BT3278	0.74	-3.9
4,191,275	+		BT3278	0.76	+2.4
4,191,276	-		BT3278	0.76	-1.9
4,191,294	-		BT3278	0.78	-0.3
4,191,299	-		BT3278	0.78	-0.9
4,191,316	-		BT3278	0.80	-1.6
4,191,380	-		BT3278	0.85	-0.1
4,191,382	+		BT3278	0.85	-0.7
4,191,436	+				-0.5
4,191,437	-				-0.8
4,191,437	-				-0.9
4,191,452	+				-2.5
4,191,452	+				+2.4
4,191,453	-				-0.7
4,191,538	+				+0.3
4,191,539	-				-0.5
4,191,543	-				-2.0
4,191,552	+				-2.6
4,191,562	-				-1.1
4,191,562	-				-0.5
4,191,562	-				-1.9
4,191,632	+				+0.2
4,191,636	-				-0.1
4,191,650	+				-1.5
4,191,651	-				+0.9
4,191,678	-				-0.1
4,191,698	-				-2.7
4,191,698	-				-1.5
4,191,740	-				-0.5
4,191,765	-				-3.5
4,191,819	-				-0.9
4,191,880	+				-0.8
4,191,895	+				-0.5
4,191,907	-				-2.7
4,191,907	-				-2.2
4,191,985	-		BT3279	0.11	+0.8
4,192,051	+		BT3279	0.13	-1.2
4,192,133	+		BT3279	0.15	-0.7
4,192,159	+		BT3279	0.16	-1.2
4,192,159	+		BT3279	0.16	-0.5
4,192,267	-		BT3279	0.19	+2.1
4,192,267	-		BT3279	0.19	-1.5
4,192,322	+		BT3279	0.21	-0.9
4,192,322	+		BT3279	0.21	-0.3
4,192,388	+		BT3279	0.23	+0.1
4,192,440	-		BT3279	0.24	-1.7
4,192,470	-		BT3279	0.25	-0.5
4,192,474	+		BT3279	0.25	-2.2
4,192,475	-				+1.1
4,192,533	-		BT3279	0.27	-2.7
4,192,553	+		BT3279	0.27	-1.9
4,192,559	+		BT3279	0.27	-2.3
4,192,560	-		BT3279	0.27	-1.5
4,192,563	+		BT3279	0.27	-2.6
4,192,590	-		BT3279	0.28	-0.8
4,192,638	+		BT3279	0.30	-1.2
4,192,638	+		BT3279	0.30	-2.4
4,192,639	-		BT3279	0.30	-2.5
4,192,639	-		BT3279	0.30	-0.7
4,192,647	-		BT3279	0.30	-1.4
4,192,670	+		BT3279	0.30	-1.7
4,192,670	+		BT3279	0.30	-0.1
4,192,715	+		BT3279	0.32	-1.8
4,192,715	+		BT3279	0.32	-0.1
4,192,715	+		BT3279	0.32	-0.9
4,192,715	+		BT3279	0.32	-4.3
4,192,716	-		BT3279	0.32	-0.5
4,192,745	-		BT3279	0.33	-2.0
4,192,758	+		BT3279	0.33	+1.1
4,192,759	-		BT3279	0.33	-1.2
4,192,817	+		BT3279	0.35	-1.0
4,192,818	-		BT3279	0.35	+1.9
4,192,818	-		BT3279	0.35	-1.4
4,192,901	+		BT3279	0.37	-1.9
4,192,902	-		BT3279	0.37	-1.8
4,192,926	-		BT3279	0.38	-2.2
4,192,956	-		BT3279	0.39	-0.9
4,192,956	-		BT3279	0.39	+0.5
4,192,976	+		BT3279	0.39	+0.5
4,193,014	-		BT3279	0.40	-1.2
4,193,033	-		BT3279	0.41	-2.8
4,193,057	-		BT3279	0.41	-0.9
4,193,108	+		BT3279	0.43	-1.9
4,193,124	+				+0.1
4,193,124	+		BT3279	0.43	+0.3
4,193,125	-		BT3279	0.43	-2.1
4,193,125	-		BT3279	0.43	-1.5
4,193,125	-		BT3279	0.43	-1.7
4,193,125	-		BT3279	0.43	+1.9
4,193,137	-		BT3279	0.44	-3.2
4,193,137	-		BT3279	0.44	-1.6
4,193,137	-		BT3279	0.44	-3.8
4,193,137	-		BT3279	0.44	-0.7
4,193,138	+		BT3279	0.44	-0.9
4,193,142	-		BT3279	0.44	-2.5
4,193,142	-		BT3279	0.44	-1.0
4,193,185	-		BT3279	0.45	-0.8
4,193,185	-		BT3279	0.45	+0.2
4,193,185	-		BT3279	0.45	+0.7
4,193,185	-		BT3279	0.45	-2.4
4,193,218	+		BT3279	0.46	+0.5
4,193,231	+		BT3279	0.46	-1.4
4,193,281	+		BT3279	0.48	-1.7
4,193,287	+		BT3279	0.48	-1.2
4,193,337	-		BT3279	0.49	-1.7
4,193,342	-		BT3279	0.49	+1.1
4,193,394	+		BT3279	0.51	-2.8
4,193,398	-		BT3279	0.51	-2.0
4,193,400	-		BT3279	0.51	+0.1
4,193,408	+		BT3279	0.51	-1.7
4,193,409	-		BT3279	0.51	-1.2
4,193,475	+		BT3279	0.53	-2.0
4,193,523	-		BT3279	0.55	-2.9
4,193,523	-		BT3279	0.55	-2.2
4,193,525	+		BT3279	0.55	-0.6
4,193,526	-		BT3279	0.55	-1.2
4,193,533	-		BT3279	0.55	-3.2
4,193,533	-		BT3279	0.55	-0.5
4,193,533	-		BT3279	0.55	+0.5
4,193,534	+		BT3279	0.55	-0.7
4,193,534	+		BT3279	0.55	-3.7
4,193,535	-		BT3279	0.55	-1.5
4,193,535	-		BT3279	0.55	-1.2
4,193,547	-		BT3279	0.55	-1.5
4,193,632	+		BT3279	0.58	-1.5
4,193,652	+		BT3279	0.58	-2.0
4,193,775	+		BT3279	0.62	-1.3
4,193,776	-		BT3279	0.62	+0.5
4,193,776	-		BT3279	0.62	-1.6
4,193,776	-		BT3279	0.62	+2.2
4,193,790	+		BT3279	0.62	+0.5
4,193,791	-		BT3279	0.62	-0.0
4,193,809	-		BT3279	0.63	-0.9
4,193,810	+		BT3279	0.63	-2.1
4,193,810	+		BT3279	0.63	-1.2
4,193,827	+		BT3279	0.63	-1.9
4,193,828	-		BT3279	0.63	-2.4
4,193,828	-		BT3279	0.63	-2.1
4,193,831	+		BT3279	0.63	-2.8
4,193,832	-		BT3279	0.63	-1.4
4,193,832	-		BT3279	0.63	-1.5
4,193,981	-		BT3279	0.67	-0.9
4,193,981	-		BT3279	0.67	-0.3
4,193,981	-		BT3279	0.67	-2.0
4,194,023	+		BT3279	0.69	+0.5
4,194,024	-		BT3279	0.69	-0.7
4,194,057	+		BT3279	0.70	-0.7
4,194,060	-		BT3279	0.70	-1.5
4,194,072	+		BT3279	0.70	-0.9
4,194,072	+		BT3279	0.70	+2.3
4,194,073	-		BT3279	0.70	-0.5
4,194,073	-		BT3279	0.70	-0.8
4,194,119	+		BT3279	0.71	-4.0
4,194,120	-		BT3279	0.71	-1.7
4,194,175	+		BT3279	0.73	-0.4
4,194,176	-		BT3279	0.73	+0.2
4,194,176	-		BT3279	0.73	-1.5
4,194,176	-		BT3279	0.73	-0.9
4,194,181	-		BT3279	0.73	+0.1
4,194,194	-		BT3279	0.73	-2.6
4,194,194	-		BT3279	0.73	+1.1
4,194,344	+		BT3279	0.78	-2.8
4,194,345	-		BT3279	0.78	-0.5
4,194,362	+		BT3279	0.78	-0.5
4,194,362	+		BT3279	0.78	-1.1
4,194,362	+		BT3279	0.78	-2.5
4,194,407	+		BT3279	0.79	-0.5
4,194,501	-		BT3279	0.82	-1.9
4,194,501	-		BT3279	0.82	+1.1
4,194,635	+		BT3279	0.86	-1.2
4,194,650	+		BT3279	0.86	+0.1
4,194,703	-		BT3279	0.88	-0.7
4,194,703	-		BT3279	0.88	+1.5
4,194,743	+		BT3279	0.89	-0.9
4,194,743	+		BT3279	0.89	-0.7
4,194,803	-				-1.2
4,194,803	-				+1.7
4,194,852	+				-3.3
4,194,853	-				-2.7
4,194,878	+				-2.1
4,194,878	+				-0.9
4,194,878	+				+0.1
4,194,885	-				+0.1
4,194,887	+				-0.9
4,194,942	-				+0.7
4,194,942	-				-1.0
4,194,949	-				+0.1
4,194,981	+				-1.0
4,195,016	+				-1.9
4,195,017	-				-1.2
4,195,090	+				+1.1
4,195,124	+				-1.9
4,195,135	-				-2.2
4,195,166	-				-1.9
4,195,166	-				-1.9
4,195,192	+				-0.9
4,195,261	-				-2.7
4,195,310	-		BT3280	0.11	-2.2
4,195,360	-		BT3280	0.15	+0.1
4,195,363	-		BT3280	0.15	+0.1
4,195,389	-		BT3280	0.17	+2.7
4,195,405	-		BT3280	0.18	-2.4
4,195,422	-		BT3280	0.19	-0.3
4,195,489	-		BT3280	0.24	-0.2
4,195,489	-		BT3280	0.24	+0.5
4,195,489	-		BT3280	0.24	-1.8
4,195,492	-		BT3280	0.24	-0.5
4,195,496	+		BT3280	0.24	-0.3
4,195,496	+		BT3280	0.24	-1.6
4,195,497	-		BT3280	0.24	+1.1
4,195,497	-		BT3280	0.24	+2.7
4,195,502	-		BT3280	0.24	-1.4
4,195,511	+		BT3280	0.25	+0.3
4,195,512	-		BT3280	0.25	-0.9
4,195,534	-		BT3280	0.27	-2.2
4,195,610	+		BT3280	0.32	+1.8
4,195,610	+		BT3280	0.32	+1.1
4,195,611	-		BT3280	0.32	-1.7
4,195,611	-		BT3280	0.32	-1.2
4,195,619	+		BT3280	0.32	-2.2
4,195,666	+		BT3280	0.36	-1.0
4,195,666	+		BT3280	0.36	-0.1
4,195,666	+		BT3280	0.36	-1.1
4,195,667	-		BT3280	0.36	+1.5
4,195,667	-		BT3280	0.36	-2.5
4,195,760	+		BT3280	0.42	-1.4
4,195,761	-		BT3280	0.42	+0.5
4,195,761	-		BT3280	0.42	-3.2
4,195,761	-		BT3280	0.42	-0.0
4,195,763	+		BT3280	0.42	-1.4
4,195,789	+		BT3280	0.44	-1.2
4,195,790	-		BT3280	0.44	+0.5
4,195,817	+		BT3280	0.46	-2.1
4,195,834	-		BT3280	0.47	-1.9
4,195,838	-		BT3280	0.47	+0.4
4,195,838	-		BT3280	0.47	-0.5
4,195,838	-		BT3280	0.47	-2.2
4,195,851	-		BT3280	0.48	-0.8
4,195,872	+		BT3280	0.50	-2.8
4,195,872	+		BT3280	0.50	-1.9
4,195,908	-		BT3280	0.52	-2.1
4,196,004	-		BT3280	0.59	-3.0
4,196,004	-		BT3280	0.59	+0.5
4,196,042	+		BT3280	0.61	-2.3