Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3121

Experiment: SJC12_cps8_0.1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SJC12_cps8_0.1MOI
3,975,422	+		BT3120	0.43	-2.3
3,975,423	-		BT3120	0.43	-1.3
3,975,423	-		BT3120	0.43	-1.3
3,975,428	+		BT3120	0.43	+1.6
3,975,429	-		BT3120	0.43	-1.0
3,975,441	+		BT3120	0.44	-0.7
3,975,441	+		BT3120	0.44	-2.4
3,975,442	-		BT3120	0.44	+1.0
3,975,442	-		BT3120	0.44	+0.1
3,975,443	+		BT3120	0.44	-0.9
3,975,443	+		BT3120	0.44	-1.3
3,975,444	-		BT3120	0.44	+0.4
3,975,444	-		BT3120	0.44	-1.6
3,975,444	-		BT3120	0.44	+0.1
3,975,461	+		BT3120	0.45	-0.4
3,975,466	+		BT3120	0.46	-1.0
3,975,466	+		BT3120	0.46	-1.5
3,975,466	+		BT3120	0.46	-1.3
3,975,466	+		BT3120	0.46	-1.1
3,975,467	-		BT3120	0.46	-2.4
3,975,467	-		BT3120	0.46	+0.0
3,975,469	-		BT3120	0.46	-3.2
3,975,635	+		BT3120	0.58	-2.2
3,975,659	-		BT3120	0.59	+1.2
3,975,710	+		BT3120	0.63	+1.0
3,975,741	-		BT3120	0.65	-0.6
3,975,782	+		BT3120	0.68	+0.5
3,975,782	+		BT3120	0.68	+0.4
3,975,782	+		BT3120	0.68	-0.8
3,975,797	+		BT3120	0.69	-2.1
3,975,813	-		BT3120	0.70	+0.0
3,975,824	+		BT3120	0.71	-1.8
3,975,858	-		BT3120	0.73	-2.7
3,975,907	+		BT3120	0.77	-1.4
3,975,910	+		BT3120	0.77	-2.6
3,975,911	-		BT3120	0.77	+0.9
3,975,912	+		BT3120	0.77	-0.7
3,975,913	-		BT3120	0.77	-1.8
3,975,919	+		BT3120	0.78	+0.4
3,975,920	-		BT3120	0.78	-1.0
3,975,920	-		BT3120	0.78	+1.2
3,975,922	-		BT3120	0.78	+1.4
3,975,945	+				+0.0
3,975,971	+		BT3120	0.81	-3.1
3,975,972	-		BT3120	0.81	-0.9
3,975,972	-		BT3120	0.81	-0.1
3,976,043	+		BT3120	0.86	-4.5
3,976,076	+		BT3120	0.89	-0.6
3,976,076	+		BT3120	0.89	+1.6
3,976,077	-		BT3120	0.89	-3.0
3,976,081	+		BT3120	0.89	-1.0
3,976,081	+		BT3120	0.89	-3.0
3,976,081	+		BT3120	0.89	-0.3
3,976,081	+		BT3120	0.89	-4.6
3,976,082	-		BT3120	0.89	-1.3
3,976,082	-		BT3120	0.89	-0.8
3,976,082	-		BT3120	0.89	-0.3
3,976,082	-		BT3120	0.89	-2.3
3,976,082	-		BT3120	0.89	+0.6
3,976,087	+		BT3120	0.90	-1.8
3,976,109	+				-1.6
3,976,110	-				-0.9
3,976,150	+				-5.0
3,976,150	+				+0.5
3,976,151	-				-2.3
3,976,170	+				+0.7
3,976,170	+				-2.6
3,976,175	-				-0.8
3,976,229	+				-0.8
3,976,229	+				-0.7
3,976,232	-				-2.3
3,976,237	+				-2.6
3,976,237	+				-1.8
3,976,238	-				-0.8
3,976,264	-				-2.2
3,976,264	-				-2.0
3,976,264	-				+0.4
3,976,264	-				-1.8
3,976,264	-				-1.3
3,976,276	+				+0.0
3,976,276	+				-0.3
3,976,283	+				-1.2
3,976,284	-				-1.8
3,976,294	+				-4.0
3,976,317	-				-0.3
3,976,327	-				-1.0
3,976,400	+				-0.1
3,976,405	+				+1.0
3,976,406	-				-2.6
3,976,406	-				-2.2
3,976,406	-				-1.6
3,976,408	-				-2.7
3,976,417	+				-1.8
3,976,417	+				-1.8
3,976,441	-				-0.0
3,976,443	-				-1.4
3,976,475	+				+0.9
3,976,604	+				-1.3
3,976,605	-				+0.0
3,976,643	+				-0.6
3,976,646	+				+0.3
3,976,646	+				-2.0
3,976,664	+				+0.0
3,976,676	+		BT3121	0.10	+1.7
3,976,692	+		BT3121	0.11	+0.0
3,976,692	+		BT3121	0.11	-0.8
3,976,754	+		BT3121	0.13	-1.0
3,976,832	-		BT3121	0.16	-2.2
3,976,880	+		BT3121	0.18	-0.6
3,976,910	+		BT3121	0.19	-2.2
3,976,910	+		BT3121	0.19	-0.5
3,976,918	+		BT3121	0.19	+1.4
3,976,928	+		BT3121	0.20	-1.3
3,976,950	+		BT3121	0.21	-3.4
3,977,012	+		BT3121	0.23	-1.3
3,977,039	+		BT3121	0.24	-0.5
3,977,052	+		BT3121	0.25	-0.3
3,977,052	+		BT3121	0.25	-1.1
3,977,053	-		BT3121	0.25	-1.3
3,977,165	+		BT3121	0.29	-0.8
3,977,238	-		BT3121	0.32	+1.9
3,977,239	+		BT3121	0.32	+1.8
3,977,239	+		BT3121	0.32	+0.8
3,977,240	-		BT3121	0.32	-1.4
3,977,332	+		BT3121	0.35	+4.9
3,977,333	-		BT3121	0.35	+0.3
3,977,406	+		BT3121	0.38	-1.0
3,977,450	-		BT3121	0.40	-2.3
3,977,452	-		BT3121	0.40	-1.6
3,977,528	+		BT3121	0.43	+0.1
3,977,529	-		BT3121	0.43	-1.4
3,977,529	-		BT3121	0.43	-2.7
3,977,529	-		BT3121	0.43	+1.5
3,977,588	+		BT3121	0.45	-1.6
3,977,588	+		BT3121	0.45	-0.8
3,977,589	-		BT3121	0.45	-1.0
3,977,589	-		BT3121	0.45	+9.1
3,977,592	+		BT3121	0.45	-1.3
3,977,592	+		BT3121	0.45	-0.3
3,977,593	-		BT3121	0.45	-1.6
3,977,593	-		BT3121	0.45	-2.2
3,977,593	-		BT3121	0.45	+7.8
3,977,609	+		BT3121	0.46	+1.6
3,977,632	+		BT3121	0.47	-0.6
3,977,632	+		BT3121	0.47	+0.4
3,977,632	+		BT3121	0.47	+0.2
3,977,632	+		BT3121	0.47	-0.3
3,977,637	+		BT3121	0.47	-1.0
3,977,682	+		BT3121	0.49	-2.6
3,977,695	+		BT3121	0.49	+1.3
3,977,718	-		BT3121	0.50	-1.7
3,977,724	+		BT3121	0.51	+0.3
3,977,725	-				-1.8
3,977,781	+		BT3121	0.53	-2.0
3,977,782	-		BT3121	0.53	-0.4
3,977,934	+		BT3121	0.59	-2.2
3,978,052	+		BT3121	0.63	-1.2
3,978,053	-		BT3121	0.63	-1.7
3,978,222	-		BT3121	0.70	-0.5
3,978,241	+		BT3121	0.70	-1.5
3,978,241	+		BT3121	0.70	-1.5
3,978,241	+		BT3121	0.70	-1.1
3,978,241	+		BT3121	0.70	-2.3
3,978,242	-		BT3121	0.71	+9.8
3,978,242	-		BT3121	0.71	-2.2
3,978,242	-		BT3121	0.71	-1.6
3,978,290	+		BT3121	0.72	+0.7
3,978,310	+		BT3121	0.73	-0.6
3,978,311	-		BT3121	0.73	+0.0
3,978,311	-		BT3121	0.73	-2.8
3,978,320	+		BT3121	0.74	-1.5
3,978,400	-		BT3121	0.77	-1.5
3,978,429	+		BT3121	0.78	-2.3
3,978,430	-		BT3121	0.78	-1.6
3,978,473	+		BT3121	0.79	-2.0
3,978,474	-		BT3121	0.79	-0.3
3,978,546	+		BT3121	0.82	+1.7
3,978,550	+		BT3121	0.82	-1.6
3,978,587	+		BT3121	0.84	-0.9
3,978,591	+		BT3121	0.84	-4.3
3,978,591	+		BT3121	0.84	+3.2
3,978,592	-		BT3121	0.84	-3.0
3,978,593	+		BT3121	0.84	-0.7
3,978,594	-		BT3121	0.84	-1.8
3,978,594	-		BT3121	0.84	-1.3
3,978,651	-		BT3121	0.86	-3.0
3,978,662	-		BT3121	0.87	-1.6
3,978,674	+		BT3121	0.87	+0.2
3,978,684	-		BT3121	0.88	-1.1
3,978,687	+		BT3121	0.88	-0.6
3,978,687	+		BT3121	0.88	-3.1
3,978,687	+		BT3121	0.88	-1.1
3,978,771	+				-0.6
3,978,772	-				-1.3
3,978,805	+				-2.9
3,978,806	-				-2.9
3,978,809	+				-0.7
3,978,810	-				-1.3
3,978,810	-				+0.4
3,978,922	+				-1.0
3,979,143	-				+0.3
3,979,171	+				-2.3
3,979,173	+				-0.1
3,979,237	-				-0.6
3,979,284	+				-1.3
3,979,288	-				-1.3
3,979,297	-				-2.0
3,979,337	+				-2.1
3,979,345	+				-3.0
3,979,345	+				-1.7
3,979,346	-				-2.2
3,979,346	-				-2.3
3,979,444	-				-0.6
3,979,444	-				-2.0
3,979,446	+				+0.3
3,979,446	+				-0.3
3,979,521	+		BT3122	0.16	-0.6
3,979,529	+		BT3122	0.17	+1.0
3,979,550	-		BT3122	0.20	-2.2
3,979,554	-		BT3122	0.20	-0.1
3,979,614	+		BT3122	0.27	-0.8
3,979,630	+		BT3122	0.29	+0.3
3,979,659	-		BT3122	0.32	-1.6
3,979,678	+		BT3122	0.34	-2.1
3,979,710	+		BT3122	0.38	-0.6
3,979,915	-		BT3122	0.62	-2.3