Experiment: SJC12_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0637 and BT0638 overlap by 1 nucleotides BT0638 and BT0639 are separated by 12 nucleotides BT0639 and BT0640 are separated by 356 nucleotides
BT0637: BT0637 - conserved hypothetical protein (NCBI ptt file), at 785,311 to 786,540
BT0637
BT0638: BT0638 - putative methionine aminopeptidase A (NCBI ptt file), at 786,540 to 787,463
BT0638
BT0639: BT0639 - conserved hypothetical protein (NCBI ptt file), at 787,476 to 788,102
BT0639
BT0640: BT0640 - Fe-S oxidoreductases family 2 (NCBI ptt file), at 788,459 to 790,102
BT0640
Position (kb) 787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 786.523 kb on - strand at 786.523 kb on - strand at 786.526 kb on + strand at 786.544 kb on + strand at 786.545 kb on - strand at 786.661 kb on + strand, within BT0638 at 786.778 kb on - strand, within BT0638 at 786.957 kb on - strand, within BT0638 at 786.963 kb on - strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.112 kb on - strand, within BT0638 at 787.211 kb on + strand, within BT0638 at 787.214 kb on - strand, within BT0638 at 787.400 kb on + strand at 787.437 kb on + strand at 787.549 kb on - strand, within BT0639 at 787.575 kb on - strand, within BT0639 at 787.670 kb on - strand, within BT0639 at 787.670 kb on - strand, within BT0639 at 787.671 kb on + strand, within BT0639 at 787.672 kb on - strand, within BT0639 at 787.672 kb on - strand, within BT0639 at 787.701 kb on - strand, within BT0639 at 787.866 kb on + strand, within BT0639 at 787.866 kb on + strand, within BT0639 at 787.867 kb on - strand, within BT0639 at 787.880 kb on + strand, within BT0639 at 787.927 kb on + strand, within BT0639 at 787.930 kb on - strand, within BT0639 at 788.079 kb on + strand at 788.079 kb on + strand at 788.091 kb on - strand at 788.092 kb on + strand at 788.105 kb on - strand at 788.180 kb on + strand at 788.217 kb on - strand at 788.224 kb on + strand at 788.225 kb on - strand at 788.271 kb on + strand at 788.272 kb on - strand at 788.272 kb on - strand at 788.291 kb on + strand at 788.301 kb on + strand at 788.348 kb on + strand at 788.378 kb on + strand at 788.386 kb on - strand at 788.427 kb on - strand at 788.433 kb on + strand at 788.460 kb on + strand at 788.460 kb on + strand at 788.493 kb on - strand at 788.590 kb on - strand at 788.666 kb on - strand, within BT0640 at 788.676 kb on - strand, within BT0640 at 788.687 kb on - strand, within BT0640 at 788.740 kb on + strand, within BT0640 at 788.792 kb on + strand, within BT0640 at 788.805 kb on - strand, within BT0640 at 788.843 kb on - strand, within BT0640 at 788.974 kb on - strand, within BT0640 at 789.023 kb on + strand, within BT0640 at 789.030 kb on - strand, within BT0640
Per-strain Table
Position Strand Gene LocusTag Fraction SJC12_cps8_0.1MOI remove 786,523 - -2.6 786,523 - -1.6 786,526 + -1.6 786,544 + -2.0 786,545 - +1.4 786,661 + BT0638 0.13 -2.2 786,778 - BT0638 0.26 -1.8 786,957 - BT0638 0.45 -1.8 786,963 - BT0638 0.46 -1.0 787,008 + BT0638 0.51 -1.8 787,008 + BT0638 0.51 -2.9 787,112 - BT0638 0.62 -1.4 787,211 + BT0638 0.73 +0.2 787,214 - BT0638 0.73 -0.3 787,400 + -2.6 787,437 + -2.4 787,549 - BT0639 0.12 +0.1 787,575 - BT0639 0.16 -0.6 787,670 - BT0639 0.31 -1.6 787,670 - BT0639 0.31 +1.4 787,671 + BT0639 0.31 +1.0 787,672 - BT0639 0.31 -0.6 787,672 - BT0639 0.31 -0.0 787,701 - BT0639 0.36 +0.3 787,866 + BT0639 0.62 -1.4 787,866 + BT0639 0.62 +1.3 787,867 - BT0639 0.62 -2.0 787,880 + BT0639 0.64 -2.0 787,927 + BT0639 0.72 +0.4 787,930 - BT0639 0.72 +1.3 788,079 + -1.4 788,079 + -0.0 788,091 - -1.7 788,092 + -0.5 788,105 - +1.0 788,180 + -0.4 788,217 - +0.4 788,224 + -1.3 788,225 - -1.5 788,271 + -1.8 788,272 - -2.0 788,272 - -0.4 788,291 + -0.4 788,301 + -1.4 788,348 + -1.6 788,378 + +0.6 788,386 - +1.0 788,427 - +0.6 788,433 + -2.7 788,460 + -0.0 788,460 + -0.4 788,493 - -2.0 788,590 - -1.6 788,666 - BT0640 0.13 -0.0 788,676 - BT0640 0.13 -1.0 788,687 - BT0640 0.14 -3.3 788,740 + BT0640 0.17 -2.1 788,792 + BT0640 0.20 -1.6 788,805 - BT0640 0.21 -0.6 788,843 - BT0640 0.23 -2.0 788,974 - BT0640 0.31 -0.8 789,023 + BT0640 0.34 -2.4 789,030 - BT0640 0.35 -1.0
Or see this region's nucleotide sequence