Experiment: SJC12_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0468 and BT0469 are separated by 38 nucleotides BT0469 and BT0470 overlap by 1 nucleotides
BT0468: BT0468 - putative F420H2-dehydrogenase 40 kDa subunit (NCBI ptt file), at 579,055 to 580,221
BT0468
BT0469: BT0469 - hypothetical protein (NCBI ptt file), at 580,260 to 581,522
BT0469
BT0470: BT0470 - hypothetical protein (NCBI ptt file), at 581,522 to 582,751
BT0470
Position (kb) 580
581
582 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 579.334 kb on - strand, within BT0468 at 579.347 kb on + strand, within BT0468 at 579.503 kb on - strand, within BT0468 at 579.551 kb on + strand, within BT0468 at 579.577 kb on - strand, within BT0468 at 579.637 kb on - strand, within BT0468 at 579.639 kb on - strand, within BT0468 at 579.641 kb on - strand, within BT0468 at 580.026 kb on - strand, within BT0468 at 580.074 kb on + strand, within BT0468 at 580.135 kb on - strand at 580.287 kb on - strand at 580.287 kb on - strand at 580.304 kb on + strand at 580.356 kb on + strand at 580.428 kb on - strand, within BT0469 at 580.468 kb on - strand, within BT0469 at 580.472 kb on + strand, within BT0469 at 580.472 kb on + strand, within BT0469 at 580.473 kb on - strand, within BT0469 at 580.503 kb on - strand, within BT0469 at 580.513 kb on - strand, within BT0469 at 580.524 kb on - strand, within BT0469 at 580.606 kb on - strand, within BT0469 at 580.639 kb on + strand, within BT0469 at 580.889 kb on - strand, within BT0469 at 580.988 kb on - strand, within BT0469 at 581.052 kb on - strand, within BT0469 at 581.089 kb on - strand, within BT0469 at 581.243 kb on - strand, within BT0469 at 581.258 kb on - strand, within BT0469 at 581.597 kb on + strand at 581.624 kb on - strand at 581.633 kb on - strand at 581.675 kb on - strand, within BT0470 at 581.797 kb on - strand, within BT0470 at 581.966 kb on - strand, within BT0470 at 582.071 kb on - strand, within BT0470 at 582.086 kb on - strand, within BT0470 at 582.100 kb on - strand, within BT0470 at 582.115 kb on - strand, within BT0470 at 582.115 kb on - strand, within BT0470 at 582.125 kb on - strand, within BT0470 at 582.125 kb on - strand, within BT0470 at 582.152 kb on - strand, within BT0470 at 582.257 kb on - strand, within BT0470 at 582.260 kb on - strand, within BT0470 at 582.260 kb on - strand, within BT0470 at 582.303 kb on - strand, within BT0470 at 582.307 kb on - strand, within BT0470 at 582.307 kb on - strand, within BT0470 at 582.391 kb on - strand, within BT0470 at 582.409 kb on - strand, within BT0470 at 582.426 kb on - strand, within BT0470 at 582.449 kb on - strand, within BT0470 at 582.498 kb on - strand, within BT0470 at 582.509 kb on - strand, within BT0470
Per-strain Table
Position Strand Gene LocusTag Fraction SJC12_cps8_0.1MOI remove 579,334 - BT0468 0.24 -1.0 579,347 + BT0468 0.25 -2.0 579,503 - BT0468 0.38 -0.0 579,551 + BT0468 0.43 -0.2 579,577 - BT0468 0.45 +1.0 579,637 - BT0468 0.50 -0.0 579,639 - BT0468 0.50 -1.3 579,641 - BT0468 0.50 -1.0 580,026 - BT0468 0.83 -0.1 580,074 + BT0468 0.87 +3.8 580,135 - -2.0 580,287 - -0.0 580,287 - -2.4 580,304 + -1.8 580,356 + +0.8 580,428 - BT0469 0.13 +1.6 580,468 - BT0469 0.16 +0.1 580,472 + BT0469 0.17 -0.0 580,472 + BT0469 0.17 -2.3 580,473 - BT0469 0.17 -1.1 580,503 - BT0469 0.19 -0.2 580,513 - BT0469 0.20 -2.0 580,524 - BT0469 0.21 -1.8 580,606 - BT0469 0.27 -2.5 580,639 + BT0469 0.30 -1.0 580,889 - BT0469 0.50 +1.0 580,988 - BT0469 0.58 +1.3 581,052 - BT0469 0.63 -0.3 581,089 - BT0469 0.66 +1.6 581,243 - BT0469 0.78 -1.8 581,258 - BT0469 0.79 -1.8 581,597 + -1.0 581,624 - +1.3 581,633 - -2.3 581,675 - BT0470 0.12 -1.1 581,797 - BT0470 0.22 -4.0 581,966 - BT0470 0.36 -0.8 582,071 - BT0470 0.45 -1.8 582,086 - BT0470 0.46 -1.5 582,100 - BT0470 0.47 -0.7 582,115 - BT0470 0.48 +2.0 582,115 - BT0470 0.48 -0.3 582,125 - BT0470 0.49 +1.2 582,125 - BT0470 0.49 +0.1 582,152 - BT0470 0.51 -0.6 582,257 - BT0470 0.60 +0.4 582,260 - BT0470 0.60 +0.3 582,260 - BT0470 0.60 +0.5 582,303 - BT0470 0.63 -1.7 582,307 - BT0470 0.64 -0.6 582,307 - BT0470 0.64 -1.1 582,391 - BT0470 0.71 -0.4 582,409 - BT0470 0.72 -1.3 582,426 - BT0470 0.73 -1.1 582,449 - BT0470 0.75 -0.8 582,498 - BT0470 0.79 -0.9 582,509 - BT0470 0.80 +2.0
Or see this region's nucleotide sequence