Experiment: SJC12_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0381 and BT0382 are separated by 7 nucleotides BT0382 and BT0383 are separated by 2 nucleotides
BT0381: BT0381 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 468,796 to 469,845
BT0381
BT0382: BT0382 - capsular polysaccharide biosynthesis protein Cps4K (NCBI ptt file), at 469,853 to 471,058
BT0382
BT0383: BT0383 - putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file), at 471,061 to 472,254
BT0383
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 468.880 kb on - strand at 469.046 kb on - strand, within BT0381 at 469.048 kb on - strand, within BT0381 at 469.135 kb on - strand, within BT0381 at 469.178 kb on + strand, within BT0381 at 469.178 kb on + strand, within BT0381 at 469.184 kb on + strand, within BT0381 at 469.210 kb on - strand, within BT0381 at 469.218 kb on + strand, within BT0381 at 469.256 kb on + strand, within BT0381 at 469.260 kb on + strand, within BT0381 at 469.271 kb on - strand, within BT0381 at 469.392 kb on + strand, within BT0381 at 469.690 kb on - strand, within BT0381 at 469.720 kb on - strand, within BT0381 at 469.749 kb on + strand at 469.749 kb on + strand at 469.754 kb on - strand at 469.755 kb on + strand at 469.758 kb on - strand at 469.853 kb on - strand at 469.858 kb on + strand at 469.867 kb on + strand at 470.004 kb on + strand at 470.005 kb on - strand, within BT0382 at 470.138 kb on - strand, within BT0382 at 470.244 kb on + strand, within BT0382 at 470.249 kb on + strand, within BT0382 at 470.261 kb on - strand, within BT0382 at 470.261 kb on - strand, within BT0382 at 470.341 kb on + strand, within BT0382 at 470.374 kb on + strand, within BT0382 at 470.377 kb on - strand, within BT0382 at 470.417 kb on - strand, within BT0382 at 470.517 kb on - strand, within BT0382 at 470.646 kb on - strand, within BT0382 at 470.655 kb on - strand, within BT0382 at 470.765 kb on - strand, within BT0382 at 470.766 kb on + strand, within BT0382 at 470.766 kb on + strand, within BT0382 at 470.916 kb on + strand, within BT0382 at 470.917 kb on - strand, within BT0382 at 471.035 kb on + strand at 471.036 kb on - strand at 471.044 kb on - strand at 471.114 kb on + strand at 471.291 kb on + strand, within BT0383 at 471.292 kb on - strand, within BT0383 at 471.292 kb on - strand, within BT0383 at 471.402 kb on + strand, within BT0383 at 471.457 kb on - strand, within BT0383 at 471.518 kb on + strand, within BT0383 at 471.703 kb on + strand, within BT0383 at 471.796 kb on + strand, within BT0383 at 471.796 kb on + strand, within BT0383 at 471.976 kb on - strand, within BT0383
Per-strain Table
Position Strand Gene LocusTag Fraction SJC12_cps8_0.1MOI remove 468,880 - -0.4 469,046 - BT0381 0.24 -3.7 469,048 - BT0381 0.24 -1.8 469,135 - BT0381 0.32 -0.3 469,178 + BT0381 0.36 +1.0 469,178 + BT0381 0.36 +0.2 469,184 + BT0381 0.37 -1.4 469,210 - BT0381 0.39 -1.5 469,218 + BT0381 0.40 -0.0 469,256 + BT0381 0.44 +1.0 469,260 + BT0381 0.44 -1.0 469,271 - BT0381 0.45 -1.0 469,392 + BT0381 0.57 -0.0 469,690 - BT0381 0.85 -1.8 469,720 - BT0381 0.88 -1.4 469,749 + -1.9 469,749 + -2.6 469,754 - -3.5 469,755 + -1.0 469,758 - -2.8 469,853 - -2.0 469,858 + +2.5 469,867 + -2.8 470,004 + -1.0 470,005 - BT0382 0.13 -2.5 470,138 - BT0382 0.24 -0.6 470,244 + BT0382 0.32 -1.0 470,249 + BT0382 0.33 -1.8 470,261 - BT0382 0.34 -2.8 470,261 - BT0382 0.34 -1.0 470,341 + BT0382 0.40 -1.8 470,374 + BT0382 0.43 -3.2 470,377 - BT0382 0.43 -2.5 470,417 - BT0382 0.47 -3.1 470,517 - BT0382 0.55 -1.0 470,646 - BT0382 0.66 -3.3 470,655 - BT0382 0.67 -1.0 470,765 - BT0382 0.76 -0.6 470,766 + BT0382 0.76 +2.0 470,766 + BT0382 0.76 -2.5 470,916 + BT0382 0.88 -1.4 470,917 - BT0382 0.88 +1.0 471,035 + -3.3 471,036 - -1.6 471,044 - -2.9 471,114 + -1.0 471,291 + BT0383 0.19 -1.4 471,292 - BT0383 0.19 -3.1 471,292 - BT0383 0.19 -2.2 471,402 + BT0383 0.29 +1.0 471,457 - BT0383 0.33 -1.0 471,518 + BT0383 0.38 -4.7 471,703 + BT0383 0.54 -1.8 471,796 + BT0383 0.62 +1.0 471,796 + BT0383 0.62 -1.5 471,976 - BT0383 0.77 -1.0
Or see this region's nucleotide sequence