Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36210

Experiment: Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36205 and BPHYT_RS36210 overlap by 4 nucleotidesBPHYT_RS36210 and BPHYT_RS36215 are separated by 127 nucleotidesBPHYT_RS36215 and BPHYT_RS36220 are separated by 51 nucleotidesBPHYT_RS36220 and BPHYT_RS36225 overlap by 23 nucleotides BPHYT_RS36205: BPHYT_RS36205 - integrase, at 56,148 to 58,031 _RS36205 BPHYT_RS36210: BPHYT_RS36210 - hypothetical protein, at 58,028 to 58,390 _RS36210 BPHYT_RS36215: BPHYT_RS36215 - hypothetical protein, at 58,518 to 59,036 _RS36215 BPHYT_RS36220: BPHYT_RS36220 - hypothetical protein, at 59,088 to 59,288 _RS36220 BPHYT_RS36225: BPHYT_RS36225 - hypothetical protein, at 59,266 to 59,538 _RS36225 Position (kb) 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1at 58.566 kb on - strandat 58.586 kb on - strand, within BPHYT_RS36215at 58.774 kb on - strand, within BPHYT_RS36215at 59.198 kb on + strand, within BPHYT_RS36220at 59.329 kb on + strand, within BPHYT_RS36225at 59.330 kb on - strand, within BPHYT_RS36225at 59.362 kb on - strand, within BPHYT_RS36225at 59.369 kb on - strand, within BPHYT_RS36225

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days
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58,566 - -1.4
58,586 - BPHYT_RS36215 0.13 +0.9
58,774 - BPHYT_RS36215 0.49 -0.7
59,198 + BPHYT_RS36220 0.55 -3.6
59,329 + BPHYT_RS36225 0.23 -2.7
59,330 - BPHYT_RS36225 0.23 -0.0
59,362 - BPHYT_RS36225 0.35 +0.3
59,369 - BPHYT_RS36225 0.38 -0.1

Or see this region's nucleotide sequence