Experiment: Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23565 and BPHYT_RS23570 are separated by 351 nucleotides BPHYT_RS23570 and BPHYT_RS23575 are separated by 28 nucleotides
BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398
_RS23565
BPHYT_RS23570: BPHYT_RS23570 - chemotaxis protein CheY, at 859,750 to 860,916
_RS23570
BPHYT_RS23575: BPHYT_RS23575 - hypothetical protein, at 860,945 to 862,186
_RS23575
Position (kb) 859
860
861 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 858.820 kb on - strand at 859.061 kb on + strand, within BPHYT_RS23565 at 859.638 kb on - strand at 859.639 kb on + strand at 859.890 kb on - strand, within BPHYT_RS23570 at 860.273 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570 at 860.722 kb on + strand, within BPHYT_RS23570 at 860.723 kb on - strand, within BPHYT_RS23570 at 860.723 kb on - strand, within BPHYT_RS23570 at 860.827 kb on - strand at 860.896 kb on - strand at 860.983 kb on - strand at 861.081 kb on + strand, within BPHYT_RS23575 at 861.087 kb on + strand, within BPHYT_RS23575 at 861.088 kb on - strand, within BPHYT_RS23575 at 861.249 kb on + strand, within BPHYT_RS23575 at 861.273 kb on + strand, within BPHYT_RS23575 at 861.273 kb on + strand, within BPHYT_RS23575 at 861.274 kb on - strand, within BPHYT_RS23575 at 861.274 kb on - strand, within BPHYT_RS23575 at 861.277 kb on + strand, within BPHYT_RS23575 at 861.306 kb on + strand, within BPHYT_RS23575 at 861.306 kb on + strand, within BPHYT_RS23575 at 861.306 kb on + strand, within BPHYT_RS23575 at 861.421 kb on + strand, within BPHYT_RS23575 at 861.454 kb on + strand, within BPHYT_RS23575 at 861.604 kb on + strand, within BPHYT_RS23575 at 861.606 kb on + strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.684 kb on + strand, within BPHYT_RS23575 at 861.751 kb on - strand, within BPHYT_RS23575 at 861.796 kb on - strand, within BPHYT_RS23575 at 861.796 kb on - strand, within BPHYT_RS23575 at 861.796 kb on - strand, within BPHYT_RS23575 at 861.852 kb on + strand, within BPHYT_RS23575 at 861.853 kb on - strand, within BPHYT_RS23575 at 861.853 kb on - strand, within BPHYT_RS23575 at 861.853 kb on - strand, within BPHYT_RS23575
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days remove 858,820 - +0.7 859,061 + BPHYT_RS23565 0.81 +0.1 859,638 - +0.5 859,639 + -0.5 859,890 - BPHYT_RS23570 0.12 -1.3 860,273 - BPHYT_RS23570 0.45 -2.5 860,336 - BPHYT_RS23570 0.50 -1.9 860,336 - BPHYT_RS23570 0.50 -1.4 860,722 + BPHYT_RS23570 0.83 -2.9 860,723 - BPHYT_RS23570 0.83 -1.4 860,723 - BPHYT_RS23570 0.83 -4.2 860,827 - -2.3 860,896 - -1.5 860,983 - +0.7 861,081 + BPHYT_RS23575 0.11 -0.3 861,087 + BPHYT_RS23575 0.11 -0.2 861,088 - BPHYT_RS23575 0.12 +0.2 861,249 + BPHYT_RS23575 0.24 +0.7 861,273 + BPHYT_RS23575 0.26 +0.7 861,273 + BPHYT_RS23575 0.26 -0.7 861,274 - BPHYT_RS23575 0.26 +1.5 861,274 - BPHYT_RS23575 0.26 +0.8 861,277 + BPHYT_RS23575 0.27 +0.5 861,306 + BPHYT_RS23575 0.29 +0.8 861,306 + BPHYT_RS23575 0.29 -0.2 861,306 + BPHYT_RS23575 0.29 -0.5 861,421 + BPHYT_RS23575 0.38 +0.2 861,454 + BPHYT_RS23575 0.41 -1.6 861,604 + BPHYT_RS23575 0.53 -0.1 861,606 + BPHYT_RS23575 0.53 +0.4 861,607 - BPHYT_RS23575 0.53 -0.4 861,607 - BPHYT_RS23575 0.53 -0.2 861,607 - BPHYT_RS23575 0.53 +1.2 861,607 - BPHYT_RS23575 0.53 -0.3 861,684 + BPHYT_RS23575 0.60 +0.2 861,751 - BPHYT_RS23575 0.65 -0.1 861,796 - BPHYT_RS23575 0.69 -0.3 861,796 - BPHYT_RS23575 0.69 +1.3 861,796 - BPHYT_RS23575 0.69 -0.6 861,852 + BPHYT_RS23575 0.73 +0.0 861,853 - BPHYT_RS23575 0.73 +0.6 861,853 - BPHYT_RS23575 0.73 -0.2 861,853 - BPHYT_RS23575 0.73 +1.1
Or see this region's nucleotide sequence