Experiment: Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19535 and BPHYT_RS19540 are separated by 134 nucleotides BPHYT_RS19540 and BPHYT_RS19545 are separated by 66 nucleotides BPHYT_RS19545 and BPHYT_RS19550 are separated by 218 nucleotides
BPHYT_RS19535: BPHYT_RS19535 - XRE family transcriptional regulator, at 4,394,505 to 4,395,191
_RS19535
BPHYT_RS19540: BPHYT_RS19540 - sensor histidine kinase, at 4,395,326 to 4,396,831
_RS19540
BPHYT_RS19545: BPHYT_RS19545 - nuclear protein SET, at 4,396,898 to 4,397,422
_RS19545
BPHYT_RS19550: BPHYT_RS19550 - oxidoreductase, at 4,397,641 to 4,398,753
_RS19550
Position (kb) 4395
4396
4397 Strain fitness (log2 ratio) -2
-1
0
1 at 4394.479 kb on + strand at 4394.489 kb on + strand at 4394.796 kb on + strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535 at 4395.090 kb on + strand, within BPHYT_RS19535 at 4395.090 kb on + strand, within BPHYT_RS19535 at 4395.091 kb on - strand, within BPHYT_RS19535 at 4395.107 kb on + strand, within BPHYT_RS19535 at 4395.190 kb on - strand at 4395.347 kb on - strand at 4395.422 kb on + strand at 4395.423 kb on - strand at 4395.440 kb on + strand at 4395.441 kb on - strand at 4395.501 kb on + strand, within BPHYT_RS19540 at 4395.502 kb on - strand, within BPHYT_RS19540 at 4395.584 kb on + strand, within BPHYT_RS19540 at 4395.585 kb on - strand, within BPHYT_RS19540 at 4395.671 kb on + strand, within BPHYT_RS19540 at 4395.671 kb on + strand, within BPHYT_RS19540 at 4395.672 kb on - strand, within BPHYT_RS19540 at 4395.672 kb on - strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.964 kb on - strand, within BPHYT_RS19540 at 4396.439 kb on + strand, within BPHYT_RS19540 at 4396.440 kb on - strand, within BPHYT_RS19540 at 4396.440 kb on - strand, within BPHYT_RS19540 at 4396.440 kb on - strand, within BPHYT_RS19540 at 4396.733 kb on - strand at 4396.825 kb on + strand at 4397.008 kb on + strand, within BPHYT_RS19545 at 4397.009 kb on - strand, within BPHYT_RS19545 at 4397.031 kb on + strand, within BPHYT_RS19545 at 4397.032 kb on - strand, within BPHYT_RS19545 at 4397.032 kb on - strand, within BPHYT_RS19545 at 4397.247 kb on + strand, within BPHYT_RS19545 at 4397.326 kb on - strand, within BPHYT_RS19545 at 4397.577 kb on + strand at 4397.771 kb on + strand, within BPHYT_RS19550 at 4397.772 kb on - strand, within BPHYT_RS19550 at 4397.772 kb on - strand, within BPHYT_RS19550 at 4397.772 kb on - strand, within BPHYT_RS19550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days remove 4,394,479 + -0.7 4,394,489 + -0.4 4,394,796 + BPHYT_RS19535 0.42 -1.5 4,394,797 - BPHYT_RS19535 0.43 -2.0 4,394,797 - BPHYT_RS19535 0.43 -0.5 4,395,090 + BPHYT_RS19535 0.85 -1.3 4,395,090 + BPHYT_RS19535 0.85 -1.1 4,395,091 - BPHYT_RS19535 0.85 -2.2 4,395,107 + BPHYT_RS19535 0.88 -1.5 4,395,190 - -1.3 4,395,347 - -0.7 4,395,422 + -1.3 4,395,423 - -0.9 4,395,440 + -0.9 4,395,441 - -1.1 4,395,501 + BPHYT_RS19540 0.12 -1.7 4,395,502 - BPHYT_RS19540 0.12 -1.0 4,395,584 + BPHYT_RS19540 0.17 -1.2 4,395,585 - BPHYT_RS19540 0.17 -1.1 4,395,671 + BPHYT_RS19540 0.23 -1.4 4,395,671 + BPHYT_RS19540 0.23 -1.4 4,395,672 - BPHYT_RS19540 0.23 -1.4 4,395,672 - BPHYT_RS19540 0.23 -1.8 4,395,959 + BPHYT_RS19540 0.42 -0.1 4,395,959 + BPHYT_RS19540 0.42 -1.6 4,395,959 + BPHYT_RS19540 0.42 -0.7 4,395,960 - BPHYT_RS19540 0.42 +0.2 4,395,960 - BPHYT_RS19540 0.42 -1.8 4,395,960 - BPHYT_RS19540 0.42 +0.3 4,395,960 - BPHYT_RS19540 0.42 -1.1 4,395,960 - BPHYT_RS19540 0.42 -2.1 4,395,964 - BPHYT_RS19540 0.42 -0.2 4,396,439 + BPHYT_RS19540 0.74 -2.1 4,396,440 - BPHYT_RS19540 0.74 +0.0 4,396,440 - BPHYT_RS19540 0.74 -0.1 4,396,440 - BPHYT_RS19540 0.74 -1.5 4,396,733 - -0.5 4,396,825 + -1.0 4,397,008 + BPHYT_RS19545 0.21 +0.1 4,397,009 - BPHYT_RS19545 0.21 -0.3 4,397,031 + BPHYT_RS19545 0.25 -0.1 4,397,032 - BPHYT_RS19545 0.26 -0.3 4,397,032 - BPHYT_RS19545 0.26 -0.3 4,397,247 + BPHYT_RS19545 0.66 +0.1 4,397,326 - BPHYT_RS19545 0.82 -0.9 4,397,577 + -0.2 4,397,771 + BPHYT_RS19550 0.12 +0.0 4,397,772 - BPHYT_RS19550 0.12 +0.7 4,397,772 - BPHYT_RS19550 0.12 -0.3 4,397,772 - BPHYT_RS19550 0.12 +0.0
Or see this region's nucleotide sequence