Experiment: Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02705 and BPHYT_RS02710 are separated by 52 nucleotides BPHYT_RS02710 and BPHYT_RS02715 are separated by 11 nucleotides BPHYT_RS02715 and BPHYT_RS02720 are separated by 13 nucleotides
BPHYT_RS02705: BPHYT_RS02705 - membrane protein, at 606,395 to 608,269
_RS02705
BPHYT_RS02710: BPHYT_RS02710 - hypothetical protein, at 608,322 to 608,507
_RS02710
BPHYT_RS02715: BPHYT_RS02715 - dioxygenase, at 608,519 to 609,331
_RS02715
BPHYT_RS02720: BPHYT_RS02720 - MarR family transcriptional regulator, at 609,345 to 610,271
_RS02720
Position (kb) 608
609 Strain fitness (log2 ratio) -1
0
1 at 607.370 kb on - strand, within BPHYT_RS02705 at 608.333 kb on - strand at 608.339 kb on - strand at 608.352 kb on - strand, within BPHYT_RS02710 at 608.499 kb on + strand at 608.717 kb on + strand, within BPHYT_RS02715 at 608.718 kb on - strand, within BPHYT_RS02715 at 608.783 kb on + strand, within BPHYT_RS02715 at 608.784 kb on - strand, within BPHYT_RS02715 at 608.813 kb on + strand, within BPHYT_RS02715 at 608.813 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.840 kb on + strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.841 kb on - strand, within BPHYT_RS02715 at 608.861 kb on + strand, within BPHYT_RS02715 at 609.011 kb on - strand, within BPHYT_RS02715 at 609.187 kb on + strand, within BPHYT_RS02715 at 609.226 kb on + strand, within BPHYT_RS02715 at 609.227 kb on - strand, within BPHYT_RS02715 at 609.264 kb on - strand at 609.346 kb on + strand at 609.347 kb on - strand at 609.347 kb on - strand at 609.355 kb on - strand at 609.474 kb on + strand, within BPHYT_RS02720 at 609.475 kb on - strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720 at 609.488 kb on + strand, within BPHYT_RS02720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days remove 607,370 - BPHYT_RS02705 0.52 -0.0 608,333 - +0.6 608,339 - -0.5 608,352 - BPHYT_RS02710 0.16 +1.5 608,499 + +0.2 608,717 + BPHYT_RS02715 0.24 +1.0 608,718 - BPHYT_RS02715 0.24 +0.2 608,783 + BPHYT_RS02715 0.32 +0.8 608,784 - BPHYT_RS02715 0.33 +0.4 608,813 + BPHYT_RS02715 0.36 -1.2 608,813 + BPHYT_RS02715 0.36 +0.5 608,840 + BPHYT_RS02715 0.39 -0.5 608,840 + BPHYT_RS02715 0.39 -0.3 608,840 + BPHYT_RS02715 0.39 -0.1 608,840 + BPHYT_RS02715 0.39 +0.2 608,840 + BPHYT_RS02715 0.39 +1.1 608,841 - BPHYT_RS02715 0.40 -0.7 608,841 - BPHYT_RS02715 0.40 -0.5 608,841 - BPHYT_RS02715 0.40 +0.1 608,841 - BPHYT_RS02715 0.40 +0.1 608,841 - BPHYT_RS02715 0.40 +0.1 608,861 + BPHYT_RS02715 0.42 -0.2 609,011 - BPHYT_RS02715 0.61 -0.6 609,187 + BPHYT_RS02715 0.82 -0.3 609,226 + BPHYT_RS02715 0.87 -0.1 609,227 - BPHYT_RS02715 0.87 +0.4 609,264 - +0.4 609,346 + +0.8 609,347 - -1.5 609,347 - +0.5 609,355 - +1.0 609,474 + BPHYT_RS02720 0.14 -0.2 609,475 - BPHYT_RS02720 0.14 +0.7 609,488 + BPHYT_RS02720 0.15 -0.4 609,488 + BPHYT_RS02720 0.15 +0.2 609,488 + BPHYT_RS02720 0.15 -0.2 609,488 + BPHYT_RS02720 0.15 +0.2
Or see this region's nucleotide sequence