Experiment: Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02685 and BPHYT_RS02690 are separated by 6 nucleotides BPHYT_RS02690 and BPHYT_RS02695 are separated by 4 nucleotides BPHYT_RS02695 and BPHYT_RS02700 are separated by 67 nucleotides BPHYT_RS02700 and BPHYT_RS02705 are separated by 265 nucleotides
BPHYT_RS02685: BPHYT_RS02685 - cytochrome C oxidase subunit I, at 603,128 to 604,237
_RS02685
BPHYT_RS02690: BPHYT_RS02690 - protoheme IX farnesyltransferase, at 604,244 to 605,149
_RS02690
BPHYT_RS02695: BPHYT_RS02695 - photosynthetic protein synthase I, at 605,154 to 605,771
_RS02695
BPHYT_RS02700: BPHYT_RS02700 - hypothetical protein, at 605,839 to 606,129
_RS02700
BPHYT_RS02705: BPHYT_RS02705 - membrane protein, at 606,395 to 608,269
_RS02705
Position (kb) 605
606 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 604.163 kb on - strand at 604.184 kb on + strand at 604.186 kb on + strand at 604.186 kb on + strand at 604.187 kb on - strand at 604.293 kb on - strand at 604.293 kb on - strand at 604.293 kb on - strand at 604.580 kb on + strand, within BPHYT_RS02690 at 604.580 kb on + strand, within BPHYT_RS02690 at 604.581 kb on - strand, within BPHYT_RS02690 at 604.622 kb on - strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.646 kb on + strand, within BPHYT_RS02690 at 604.647 kb on - strand, within BPHYT_RS02690 at 604.647 kb on - strand, within BPHYT_RS02690 at 604.648 kb on + strand, within BPHYT_RS02690 at 604.839 kb on - strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.886 kb on + strand, within BPHYT_RS02690 at 604.900 kb on + strand, within BPHYT_RS02690 at 604.910 kb on + strand, within BPHYT_RS02690 at 604.910 kb on + strand, within BPHYT_RS02690 at 604.911 kb on - strand, within BPHYT_RS02690 at 604.973 kb on + strand, within BPHYT_RS02690 at 604.973 kb on + strand, within BPHYT_RS02690 at 604.974 kb on - strand, within BPHYT_RS02690 at 605.150 kb on + strand at 605.151 kb on - strand at 605.347 kb on - strand, within BPHYT_RS02695 at 605.359 kb on + strand, within BPHYT_RS02695 at 605.360 kb on - strand, within BPHYT_RS02695 at 605.526 kb on + strand, within BPHYT_RS02695 at 605.527 kb on - strand, within BPHYT_RS02695 at 605.527 kb on - strand, within BPHYT_RS02695 at 605.650 kb on - strand, within BPHYT_RS02695 at 605.650 kb on - strand, within BPHYT_RS02695 at 605.676 kb on + strand, within BPHYT_RS02695 at 605.676 kb on + strand, within BPHYT_RS02695 at 605.677 kb on - strand, within BPHYT_RS02695 at 605.677 kb on - strand, within BPHYT_RS02695 at 606.107 kb on + strand at 606.107 kb on + strand at 606.108 kb on - strand at 606.111 kb on + strand at 606.112 kb on - strand at 606.125 kb on + strand at 606.125 kb on + strand at 606.126 kb on - strand at 606.126 kb on - strand at 606.298 kb on - strand at 606.298 kb on - strand at 606.298 kb on - strand at 606.305 kb on + strand at 606.328 kb on - strand at 606.414 kb on + strand at 606.415 kb on - strand at 606.415 kb on - strand at 606.415 kb on - strand at 606.416 kb on - strand at 606.761 kb on + strand, within BPHYT_RS02705
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days remove 604,163 - -1.9 604,184 + -0.5 604,186 + -0.3 604,186 + -0.5 604,187 - -3.3 604,293 - -6.5 604,293 - -4.6 604,293 - -1.2 604,580 + BPHYT_RS02690 0.37 -4.0 604,580 + BPHYT_RS02690 0.37 -3.6 604,581 - BPHYT_RS02690 0.37 -0.7 604,622 - BPHYT_RS02690 0.42 -1.5 604,646 + BPHYT_RS02690 0.44 -4.0 604,646 + BPHYT_RS02690 0.44 -5.7 604,646 + BPHYT_RS02690 0.44 -3.9 604,647 - BPHYT_RS02690 0.44 -4.2 604,647 - BPHYT_RS02690 0.44 -5.7 604,648 + BPHYT_RS02690 0.45 -4.0 604,839 - BPHYT_RS02690 0.66 -4.3 604,886 + BPHYT_RS02690 0.71 -2.3 604,886 + BPHYT_RS02690 0.71 -2.3 604,886 + BPHYT_RS02690 0.71 -3.8 604,900 + BPHYT_RS02690 0.72 -3.9 604,910 + BPHYT_RS02690 0.74 -3.8 604,910 + BPHYT_RS02690 0.74 -2.6 604,911 - BPHYT_RS02690 0.74 -3.3 604,973 + BPHYT_RS02690 0.80 -0.7 604,973 + BPHYT_RS02690 0.80 -5.2 604,974 - BPHYT_RS02690 0.81 +1.4 605,150 + +0.8 605,151 - -1.0 605,347 - BPHYT_RS02695 0.31 -1.8 605,359 + BPHYT_RS02695 0.33 -1.5 605,360 - BPHYT_RS02695 0.33 -1.1 605,526 + BPHYT_RS02695 0.60 +0.1 605,527 - BPHYT_RS02695 0.60 -1.9 605,527 - BPHYT_RS02695 0.60 -1.5 605,650 - BPHYT_RS02695 0.80 +0.0 605,650 - BPHYT_RS02695 0.80 -0.7 605,676 + BPHYT_RS02695 0.84 -1.5 605,676 + BPHYT_RS02695 0.84 +0.8 605,677 - BPHYT_RS02695 0.85 -2.5 605,677 - BPHYT_RS02695 0.85 -1.1 606,107 + +0.0 606,107 + +2.0 606,108 - -2.8 606,111 + +0.5 606,112 - +0.2 606,125 + +0.3 606,125 + +0.0 606,126 - +0.3 606,126 - +0.7 606,298 - -0.7 606,298 - -0.2 606,298 - -0.0 606,305 + -0.3 606,328 - -0.8 606,414 + -0.0 606,415 - +0.1 606,415 - -0.1 606,415 - +3.4 606,416 - -1.0 606,761 + BPHYT_RS02705 0.20 -0.6
Or see this region's nucleotide sequence