Experiment: Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00120 and BPHYT_RS00125 are separated by 334 nucleotides BPHYT_RS00125 and BPHYT_RS00130 are separated by 43 nucleotides
BPHYT_RS00120: BPHYT_RS00120 - aldehyde dehydrogenase, at 34,086 to 35,606
_RS00120
BPHYT_RS00125: BPHYT_RS00125 - AraC family transcriptional regulator, at 35,941 to 36,990
_RS00125
BPHYT_RS00130: BPHYT_RS00130 - ATPase P, at 37,034 to 39,139
_RS00130
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1 at 35.161 kb on + strand, within BPHYT_RS00120 at 35.524 kb on - strand at 35.637 kb on - strand at 35.637 kb on - strand at 35.638 kb on + strand at 35.650 kb on + strand at 35.651 kb on - strand at 35.652 kb on + strand at 35.653 kb on - strand at 35.721 kb on + strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.742 kb on - strand at 36.073 kb on + strand, within BPHYT_RS00125 at 36.254 kb on + strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.647 kb on - strand, within BPHYT_RS00125 at 36.717 kb on + strand, within BPHYT_RS00125 at 36.753 kb on - strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.766 kb on + strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 36.767 kb on - strand, within BPHYT_RS00125 at 37.070 kb on + strand at 37.403 kb on + strand, within BPHYT_RS00130 at 37.404 kb on - strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.724 kb on + strand, within BPHYT_RS00130 at 37.986 kb on + strand, within BPHYT_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days remove 35,161 + BPHYT_RS00120 0.71 -1.5 35,524 - -1.2 35,637 - -0.9 35,637 - -0.7 35,638 + -0.8 35,650 + -0.7 35,651 - -1.9 35,652 + -0.9 35,653 - -1.1 35,721 + -0.9 35,722 - -1.8 35,722 - +0.0 35,722 - -0.6 35,741 + -1.8 35,741 + -1.2 35,741 + -0.9 35,742 - +0.5 36,073 + BPHYT_RS00125 0.13 -0.4 36,254 + BPHYT_RS00125 0.30 -0.3 36,255 - BPHYT_RS00125 0.30 -0.2 36,255 - BPHYT_RS00125 0.30 -0.5 36,647 - BPHYT_RS00125 0.67 +0.3 36,717 + BPHYT_RS00125 0.74 +0.4 36,753 - BPHYT_RS00125 0.77 -0.4 36,766 + BPHYT_RS00125 0.79 -0.2 36,766 + BPHYT_RS00125 0.79 +0.4 36,767 - BPHYT_RS00125 0.79 -0.8 36,767 - BPHYT_RS00125 0.79 -1.3 37,070 + -0.0 37,403 + BPHYT_RS00130 0.18 +0.7 37,404 - BPHYT_RS00130 0.18 +0.4 37,724 + BPHYT_RS00130 0.33 +0.0 37,724 + BPHYT_RS00130 0.33 -1.3 37,986 + BPHYT_RS00130 0.45 -0.0
Or see this region's nucleotide sequence