Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2911

Experiment: HNL05_cps7_0.1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HNL05_cps7_0.1MOI
3,646,327	+		BT2910	0.27	+0.7
3,646,371	-		BT2910	0.32	-1.9
3,646,404	-		BT2910	0.35	+0.5
3,646,451	-		BT2910	0.41	-2.1
3,646,451	-		BT2910	0.41	-1.6
3,646,451	-		BT2910	0.41	-0.7
3,646,461	-		BT2910	0.42	-1.4
3,646,474	-		BT2910	0.43	-2.4
3,646,493	+		BT2910	0.46	-2.0
3,646,493	+		BT2910	0.46	-0.5
3,646,503	+		BT2910	0.47	-1.3
3,646,503	+		BT2910	0.47	+1.1
3,646,505	+		BT2910	0.47	+0.3
3,646,506	-		BT2910	0.47	-2.7
3,646,506	-		BT2910	0.47	-1.3
3,646,506	-		BT2910	0.47	-1.5
3,646,510	+		BT2910	0.48	-1.8
3,646,534	+		BT2910	0.50	+0.1
3,646,535	-		BT2910	0.50	-1.7
3,646,579	+		BT2910	0.55	-0.5
3,646,624	+		BT2910	0.60	+0.6
3,646,681	+		BT2910	0.67	-0.9
3,646,689	+		BT2910	0.68	+0.1
3,646,690	-		BT2910	0.68	-1.3
3,646,741	+		BT2910	0.74	-1.8
3,646,790	-		BT2910	0.79	-1.5
3,646,791	+		BT2910	0.79	+2.1
3,646,814	+		BT2910	0.82	+0.1
3,646,815	-		BT2910	0.82	+1.9
3,646,815	-		BT2910	0.82	-1.1
3,646,842	+		BT2910	0.85	-0.9
3,646,933	+				-2.8
3,646,954	+				+2.7
3,646,955	-				-0.0
3,646,955	-				-0.3
3,646,979	+				-1.8
3,647,124	-				-1.3
3,647,129	-				+1.0
3,647,138	+				-2.5
3,647,138	+				+0.3
3,647,140	+				-1.7
3,647,163	+				-0.8
3,647,187	-				-2.2
3,647,190	+				-2.1
3,647,191	-				+1.3
3,647,206	+				-2.9
3,647,229	+				-0.9
3,647,239	+				-2.4
3,647,243	-				-1.9
3,647,253	-				+2.9
3,647,253	-				-0.5
3,647,275	+				+1.3
3,647,276	-				+1.8
3,647,289	-				-3.8
3,647,295	+				-1.8
3,647,295	+				-0.5
3,647,296	-				+0.1
3,647,296	-				+0.5
3,647,296	-				-1.3
3,647,297	+				-0.9
3,647,299	+				+1.2
3,647,299	+				-0.8
3,647,313	+				+0.1
3,647,313	+				-2.6
3,647,314	-				-1.1
3,647,321	+				-2.1
3,647,321	+				+0.8
3,647,321	+				-1.8
3,647,336	+				+1.1
3,647,419	+				+2.4
3,647,424	+				-1.9
3,647,425	-				+0.1
3,647,463	+				-5.0
3,647,475	+				-1.8
3,647,475	+				-0.2
3,647,579	-		BT2911	0.13	-1.5
3,647,593	+		BT2911	0.14	-0.2
3,647,593	+		BT2911	0.14	-2.3
3,647,593	+		BT2911	0.14	+1.1
3,647,594	-		BT2911	0.14	-1.7
3,647,636	+		BT2911	0.16	-2.1
3,647,637	-		BT2911	0.16	-2.4
3,647,638	+		BT2911	0.16	+1.3
3,647,638	+		BT2911	0.16	-0.5
3,647,659	+		BT2911	0.17	-1.5
3,647,692	-		BT2911	0.19	-0.6
3,647,712	+		BT2911	0.20	+2.4
3,647,721	+		BT2911	0.21	-2.3
3,647,721	+		BT2911	0.21	+2.4
3,647,727	-		BT2911	0.21	-2.4
3,647,813	-		BT2911	0.25	-1.5
3,647,824	-		BT2911	0.26	-0.2
3,647,865	+		BT2911	0.28	-0.2
3,647,865	+		BT2911	0.28	-1.6
3,647,898	+				-0.5
3,647,898	+		BT2911	0.30	-2.2
3,647,905	+		BT2911	0.30	-0.5
3,647,923	-		BT2911	0.31	+0.6
3,648,003	+		BT2911	0.35	-1.3
3,648,003	+		BT2911	0.35	-0.3
3,648,004	-		BT2911	0.35	-0.9
3,648,066	+		BT2911	0.38	-1.3
3,648,144	-		BT2911	0.42	-1.3
3,648,197	-		BT2911	0.45	+0.7
3,648,197	-		BT2911	0.45	-1.9
3,648,197	-		BT2911	0.45	-0.7
3,648,201	+		BT2911	0.45	-1.7
3,648,201	+		BT2911	0.45	-1.4
3,648,214	-		BT2911	0.46	-1.5
3,648,302	-		BT2911	0.50	+0.3
3,648,302	-		BT2911	0.50	-0.5
3,648,309	+		BT2911	0.50	-1.5
3,648,323	-		BT2911	0.51	+0.1
3,648,383	+		BT2911	0.54	+1.1
3,648,383	+		BT2911	0.54	-1.5
3,648,531	-		BT2911	0.62	-2.2
3,648,555	+		BT2911	0.63	-0.9
3,648,646	+		BT2911	0.68	+0.3
3,648,652	-		BT2911	0.68	-2.3
3,648,652	-		BT2911	0.68	-1.4
3,648,656	-		BT2911	0.68	-4.1
3,648,681	+		BT2911	0.69	-0.5
3,648,681	+		BT2911	0.69	-0.5
3,648,681	+		BT2911	0.69	-4.1
3,648,746	-		BT2911	0.73	-2.7
3,648,801	+		BT2911	0.75	-2.5
3,648,820	+		BT2911	0.76	+0.1
3,648,821	-		BT2911	0.76	-2.1
3,648,821	-		BT2911	0.76	-2.5
3,648,821	-		BT2911	0.76	+0.6
3,648,869	-		BT2911	0.79	+0.5
3,648,886	+		BT2911	0.80	-3.0
3,648,887	-		BT2911	0.80	-1.3
3,648,898	-		BT2911	0.80	-0.4
3,648,921	+		BT2911	0.82	-2.1
3,648,922	-		BT2911	0.82	-2.4
3,648,926	-		BT2911	0.82	-1.9
3,648,946	+		BT2911	0.83	-1.4
3,648,947	-		BT2911	0.83	-0.0
3,648,947	-		BT2911	0.83	-1.7
3,648,947	-		BT2911	0.83	-1.8
3,648,979	+		BT2911	0.84	-1.9
3,648,979	+		BT2911	0.84	+0.4
3,648,980	-		BT2911	0.85	-1.2
3,649,036	+		BT2911	0.87	-2.4
3,649,076	-		BT2911	0.89	-1.6
3,649,082	+		BT2911	0.90	-2.5
3,649,102	+				-1.5
3,649,142	-				-0.3
3,649,180	-				-0.3
3,649,180	-				-2.1
3,649,225	-				-1.5
3,649,234	+				+0.8
3,649,234	+				-2.3
3,649,253	-				-1.6
3,649,254	+				-1.7
3,649,401	+				-1.3
3,649,401	+				-2.3
3,649,402	-				-0.9
3,649,437	-				-1.5
3,649,460	+				-1.9
3,649,485	-				+0.1
3,649,491	+				-1.0
3,649,492	-				-1.5
3,649,511	-				-2.0
3,649,511	-				-3.5
3,649,511	-				-0.2
3,649,527	+				+0.5
3,649,528	-				+1.1
3,649,553	+				-1.7
3,649,586	+				-1.7
3,649,731	+				-1.0
3,649,733	+				-1.9
3,649,734	-				-1.7
3,649,734	-				+0.1
3,649,745	+				-1.1
3,649,762	+		BT2912	0.10	-0.9
3,649,763	-		BT2912	0.10	-0.9
3,649,763	-		BT2912	0.10	-1.5
3,649,763	-		BT2912	0.10	-1.7
3,649,766	+		BT2912	0.10	+0.5
3,649,766	+		BT2912	0.10	+0.2
3,649,766	+		BT2912	0.10	-1.2
3,649,766	+		BT2912	0.10	-1.9
3,649,766	+		BT2912	0.10	+0.3
3,649,767	-		BT2912	0.10	-0.9
3,649,783	+		BT2912	0.11	+2.1
3,649,827	-		BT2912	0.11	-1.3
3,649,835	+		BT2912	0.12	-0.2
3,649,836	-		BT2912	0.12	-2.9
3,649,935	+		BT2912	0.14	-1.7
3,649,935	+		BT2912	0.14	-1.5
3,649,936	-		BT2912	0.14	-1.1
3,649,994	+		BT2912	0.15	+1.5
3,650,040	+		BT2912	0.16	+0.6
3,650,040	+		BT2912	0.16	+0.1
3,650,046	+		BT2912	0.16	-2.6
3,650,114	+		BT2912	0.18	-1.3
3,650,114	+		BT2912	0.18	+0.4
3,650,115	-		BT2912	0.18	-0.3
3,650,123	+		BT2912	0.18	-2.3
3,650,124	-		BT2912	0.18	-3.1
3,650,125	+		BT2912	0.18	+0.5
3,650,128	+		BT2912	0.18	+0.7
3,650,150	+		BT2912	0.18	+0.2
3,650,206	+		BT2912	0.20	-0.0
3,650,206	+		BT2912	0.20	-0.9
3,650,207	-		BT2912	0.20	+0.1
3,650,217	+		BT2912	0.20	+0.7
3,650,218	-		BT2912	0.20	+0.3
3,650,219	+		BT2912	0.20	-2.9
3,650,219	+		BT2912	0.20	+1.9
3,650,219	+		BT2912	0.20	+0.1
3,650,243	+		BT2912	0.20	-0.0
3,650,245	+		BT2912	0.20	-5.2
3,650,258	+		BT2912	0.21	-0.7