Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2872

Experiment: HNL05_cps7_0.1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HNL05_cps7_0.1MOI
3,591,675	+		BT2870	0.89	+0.1
3,591,675	+		BT2870	0.89	-0.9
3,591,675	+		BT2870	0.89	-1.6
3,591,675	+		BT2870	0.89	-1.7
3,591,676	-		BT2870	0.90	-1.3
3,591,676	-		BT2870	0.90	-0.3
3,591,737	-				-1.3
3,591,744	-				+1.1
3,591,744	-				+0.4
3,591,744	-				-0.9
3,591,754	-				-2.4
3,591,810	+				+0.2
3,591,811	-				-0.9
3,591,824	+				-2.3
3,591,828	+				-1.5
3,591,887	+		BT2871	0.14	+2.4
3,591,887	+		BT2871	0.14	+0.1
3,591,891	+		BT2871	0.14	-1.3
3,591,933	+		BT2871	0.19	-2.1
3,591,941	+		BT2871	0.20	-0.0
3,591,945	-				-1.2
3,591,945	-		BT2871	0.20	-1.4
3,591,949	-		BT2871	0.21	+0.6
3,591,958	+		BT2871	0.22	-1.7
3,592,069	-		BT2871	0.35	+1.1
3,592,069	-		BT2871	0.35	+1.8
3,592,069	-		BT2871	0.35	-3.3
3,592,075	+		BT2871	0.35	+1.6
3,592,076	-		BT2871	0.35	-1.9
3,592,076	-		BT2871	0.35	+0.7
3,592,098	+		BT2871	0.38	-2.4
3,592,101	+		BT2871	0.38	-1.1
3,592,101	+		BT2871	0.38	-1.4
3,592,129	-		BT2871	0.41	-1.1
3,592,129	-		BT2871	0.41	+0.9
3,592,156	+		BT2871	0.45	+1.1
3,592,156	+		BT2871	0.45	-1.4
3,592,169	-		BT2871	0.46	+0.1
3,592,186	+		BT2871	0.48	+0.2
3,592,200	+		BT2871	0.50	-0.4
3,592,201	-		BT2871	0.50	-0.9
3,592,207	-		BT2871	0.50	-1.5
3,592,207	-		BT2871	0.50	+0.6
3,592,218	+		BT2871	0.52	-1.9
3,592,228	-		BT2871	0.53	-0.5
3,592,230	-		BT2871	0.53	-2.5
3,592,243	-		BT2871	0.54	+1.3
3,592,282	+		BT2871	0.59	-2.9
3,592,291	-		BT2871	0.60	+0.5
3,592,322	+		BT2871	0.63	+1.8
3,592,322	+		BT2871	0.63	-0.2
3,592,376	+		BT2871	0.70	-2.4
3,592,412	+		BT2871	0.74	+0.6
3,592,413	-		BT2871	0.74	-1.5
3,592,413	-		BT2871	0.74	-0.4
3,592,423	+		BT2871	0.75	-1.5
3,592,482	+		BT2871	0.82	-0.3
3,592,506	-		BT2871	0.84	+0.1
3,592,533	+		BT2871	0.88	-0.3
3,592,534	-		BT2871	0.88	-1.9
3,592,535	+		BT2871	0.88	-2.3
3,592,535	+		BT2871	0.88	-2.5
3,592,535	+		BT2871	0.88	+0.3
3,592,535	+		BT2871	0.88	-1.1
3,592,536	-		BT2871	0.88	+2.1
3,592,536	-		BT2871	0.88	-0.9
3,592,579	+				+0.4
3,592,613	+				-1.9
3,592,631	+				-0.6
3,592,712	-				+0.3
3,592,850	+		BT2872	0.23	-2.3
3,592,961	-		BT2872	0.35	+1.4
3,592,963	+		BT2872	0.35	-3.2
3,592,964	-		BT2872	0.35	-0.1
3,592,964	-		BT2872	0.35	-2.1
3,592,964	-		BT2872	0.35	+0.3
3,592,981	+		BT2872	0.37	+1.5
3,593,014	-		BT2872	0.41	+0.6
3,593,062	-		BT2872	0.46	-1.5
3,593,112	-		BT2872	0.51	-1.4
3,593,119	+				-0.5
3,593,132	+		BT2872	0.54	-2.2
3,593,132	+		BT2872	0.54	-1.9
3,593,142	+		BT2872	0.55	-2.1
3,593,142	+		BT2872	0.55	-1.8
3,593,153	+		BT2872	0.56	-2.7
3,593,199	-		BT2872	0.61	-1.3
3,593,238	-		BT2872	0.65	+1.1
3,593,240	-		BT2872	0.65	-1.9
3,593,241	+		BT2872	0.65	-0.5
3,593,250	-		BT2872	0.66	-1.3
3,593,255	+		BT2872	0.67	-1.8
3,593,255	+		BT2872	0.67	-1.1
3,593,255	+		BT2872	0.67	-1.9
3,593,255	+		BT2872	0.67	-2.0
3,593,256	-		BT2872	0.67	-2.2
3,593,256	-		BT2872	0.67	-1.2
3,593,256	-		BT2872	0.67	-2.4
3,593,323	-		BT2872	0.74	-3.4
3,593,416	-		BT2872	0.84	-3.4
3,593,423	+		BT2872	0.85	-2.6
3,593,437	-		BT2872	0.86	-2.2
3,593,439	+		BT2872	0.87	-2.3
3,593,440	-		BT2872	0.87	-1.8
3,593,446	+		BT2872	0.87	-2.1
3,593,452	+		BT2872	0.88	-1.3
3,593,495	-				-0.9
3,593,495	-				-1.3
3,593,533	+				+0.5
3,593,546	+				-1.3
3,593,546	+				-1.5
3,593,547	-				-1.5
3,593,596	+				-2.8
3,593,596	+				-1.8
3,593,611	-				-1.9
3,593,642	+				-3.3
3,593,643	-				-1.2
3,593,650	-				-0.7
3,593,660	+				-0.9
3,593,661	-				-0.9
3,593,671	-		BT2873	0.10	+0.5
3,593,774	+		BT2873	0.21	+1.9
3,593,779	+		BT2873	0.22	-1.3
3,593,779	+		BT2873	0.22	+2.1
3,593,780	-		BT2873	0.22	-0.2
3,593,780	-		BT2873	0.22	-2.3
3,593,780	-		BT2873	0.22	+1.6
3,593,784	+		BT2873	0.22	+0.1
3,593,784	+		BT2873	0.22	-0.8
3,593,784	+		BT2873	0.22	+0.2
3,593,784	+		BT2873	0.22	-0.2
3,593,846	+		BT2873	0.29	-1.9
3,593,846	+		BT2873	0.29	-0.5
3,593,847	-		BT2873	0.29	-1.1
3,593,872	-		BT2873	0.32	-3.2
3,593,872	-		BT2873	0.32	-1.9
3,593,882	+		BT2873	0.33	-2.3
3,593,952	-		BT2873	0.41	-0.4
3,593,952	-		BT2873	0.41	-1.3
3,593,952	-		BT2873	0.41	-2.8
3,594,036	+		BT2873	0.50	+0.1
3,594,039	+		BT2873	0.50	-0.9
3,594,054	+		BT2873	0.52	+0.5
3,594,054	+		BT2873	0.52	-1.4
3,594,054	+		BT2873	0.52	-0.4
3,594,147	-		BT2873	0.62	-1.5
3,594,187	+		BT2873	0.66	-0.6
3,594,187	+		BT2873	0.66	-2.5
3,594,187	+		BT2873	0.66	+0.2
3,594,187	+		BT2873	0.66	+1.3
3,594,191	+		BT2873	0.66	-0.9
3,594,206	+		BT2873	0.68	-4.2
3,594,217	+		BT2873	0.69	-0.5
3,594,271	-		BT2873	0.75	-1.8
3,594,272	+		BT2873	0.75	-0.5
3,594,272	+		BT2873	0.75	+0.2
3,594,272	+		BT2873	0.75	-0.5
3,594,272	+		BT2873	0.75	-3.4
3,594,273	-		BT2873	0.75	-1.8
3,594,274	+		BT2873	0.75	-0.9
3,594,276	+		BT2873	0.75	-1.5
3,594,276	+		BT2873	0.75	-0.3
3,594,276	+		BT2873	0.75	-2.3
3,594,276	+		BT2873	0.75	-3.5
3,594,277	-		BT2873	0.75	-1.3
3,594,331	+		BT2873	0.81	-0.8
3,594,332	-		BT2873	0.81	-1.9
3,594,335	-		BT2873	0.82	-1.2
3,594,340	+		BT2873	0.82	+1.7
3,594,380	-		BT2873	0.87	-1.4
3,594,394	+		BT2873	0.88	+0.2
3,594,395	-		BT2873	0.88	-2.7
3,594,424	+				+0.2
3,594,431	+				-3.0
3,594,432	-				+0.7
3,594,441	+				-0.5
3,594,441	+				-1.9
3,594,442	-				+1.1
3,594,442	-				+0.8
3,594,468	+				-2.2
3,594,469	-				+0.5
3,594,478	+				-0.2
3,594,510	+				+0.2
3,594,511	-				-0.5
3,594,533	-				+1.1