Experiment: DAC22_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT2136 and BT2137 are separated by 744 nucleotides BT2137 and BT2138 are separated by 173 nucleotides BT2138 and BT2139 are separated by 284 nucleotides
BT2136: BT2136 - putative purple acid phosphatase (NCBI ptt file), at 2,688,931 to 2,690,289
BT2136
BT2137: BT2137 - transposase (NCBI ptt file), at 2,691,034 to 2,691,753
BT2137
BT2138: BT2138 - conserved hypothetical protein (NCBI ptt file), at 2,691,927 to 2,692,310
BT2138
BT2139: BT2139 - conserved hypothetical protein (NCBI ptt file), at 2,692,595 to 2,693,698
BT2139
Position (kb)
2691
2692 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2690.035 kb on - strand, within BT2136 at 2690.143 kb on + strand, within BT2136 at 2690.176 kb on + strand at 2690.188 kb on - strand at 2690.324 kb on + strand at 2690.324 kb on + strand at 2690.383 kb on - strand at 2690.398 kb on + strand at 2690.402 kb on + strand at 2690.435 kb on + strand at 2690.435 kb on + strand at 2690.448 kb on - strand at 2690.454 kb on + strand at 2690.457 kb on + strand at 2690.534 kb on + strand at 2690.545 kb on + strand at 2690.545 kb on + strand at 2690.546 kb on - strand at 2690.546 kb on - strand at 2690.551 kb on - strand at 2690.551 kb on - strand at 2690.582 kb on + strand at 2690.588 kb on - strand at 2690.593 kb on - strand at 2690.806 kb on - strand at 2692.420 kb on - strand at 2692.440 kb on + strand at 2692.453 kb on + strand at 2692.543 kb on + strand at 2692.565 kb on + strand at 2692.672 kb on - strand at 2692.698 kb on + strand at 2692.698 kb on + strand at 2692.748 kb on + strand, within BT2139 at 2692.749 kb on - strand, within BT2139
Per-strain Table
Position Strand Gene LocusTag Fraction DAC22_cps8_0.1MOI remove 2,690,035 - BT2136 0.81 -1.3 2,690,143 + BT2136 0.89 -2.8 2,690,176 + -0.0 2,690,188 - -2.3 2,690,324 + -0.3 2,690,324 + -1.0 2,690,383 - -1.8 2,690,398 + +0.5 2,690,402 + -0.6 2,690,435 + -0.6 2,690,435 + -0.8 2,690,448 - -1.0 2,690,454 + +2.2 2,690,457 + +0.6 2,690,534 + +1.0 2,690,545 + -0.3 2,690,545 + -1.0 2,690,546 - -0.7 2,690,546 - -0.0 2,690,551 - -0.6 2,690,551 - +0.7 2,690,582 + -1.0 2,690,588 - -1.2 2,690,593 - +1.6 2,690,806 - +1.0 2,692,420 - +0.6 2,692,440 + -0.4 2,692,453 + +0.4 2,692,543 + -1.7 2,692,565 + +1.0 2,692,672 - -1.3 2,692,698 + +1.4 2,692,698 + +0.7 2,692,748 + BT2139 0.14 +0.1 2,692,749 - BT2139 0.14 -1.2
Or see this region's nucleotide sequence