Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2137

Experiment: DAC22_cps8_0.1MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2136 and BT2137 are separated by 744 nucleotidesBT2137 and BT2138 are separated by 173 nucleotidesBT2138 and BT2139 are separated by 284 nucleotides BT2136: BT2136 - putative purple acid phosphatase (NCBI ptt file), at 2,688,931 to 2,690,289 BT2136 BT2137: BT2137 - transposase (NCBI ptt file), at 2,691,034 to 2,691,753 BT2137 BT2138: BT2138 - conserved hypothetical protein (NCBI ptt file), at 2,691,927 to 2,692,310 BT2138 BT2139: BT2139 - conserved hypothetical protein (NCBI ptt file), at 2,692,595 to 2,693,698 BT2139 Position (kb) 2691 2692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2690.035 kb on - strand, within BT2136at 2690.143 kb on + strand, within BT2136at 2690.176 kb on + strandat 2690.188 kb on - strandat 2690.324 kb on + strandat 2690.324 kb on + strandat 2690.383 kb on - strandat 2690.398 kb on + strandat 2690.402 kb on + strandat 2690.435 kb on + strandat 2690.435 kb on + strandat 2690.448 kb on - strandat 2690.454 kb on + strandat 2690.457 kb on + strandat 2690.534 kb on + strandat 2690.545 kb on + strandat 2690.545 kb on + strandat 2690.546 kb on - strandat 2690.546 kb on - strandat 2690.551 kb on - strandat 2690.551 kb on - strandat 2690.582 kb on + strandat 2690.588 kb on - strandat 2690.593 kb on - strandat 2690.806 kb on - strandat 2692.420 kb on - strandat 2692.440 kb on + strandat 2692.453 kb on + strandat 2692.543 kb on + strandat 2692.565 kb on + strandat 2692.672 kb on - strandat 2692.698 kb on + strandat 2692.698 kb on + strandat 2692.748 kb on + strand, within BT2139at 2692.749 kb on - strand, within BT2139

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Per-strain Table

Position Strand Gene LocusTag Fraction DAC22_cps8_0.1MOI
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2,690,035 - BT2136 0.81 -1.3
2,690,143 + BT2136 0.89 -2.8
2,690,176 + -0.0
2,690,188 - -2.3
2,690,324 + -0.3
2,690,324 + -1.0
2,690,383 - -1.8
2,690,398 + +0.5
2,690,402 + -0.6
2,690,435 + -0.6
2,690,435 + -0.8
2,690,448 - -1.0
2,690,454 + +2.2
2,690,457 + +0.6
2,690,534 + +1.0
2,690,545 + -0.3
2,690,545 + -1.0
2,690,546 - -0.7
2,690,546 - -0.0
2,690,551 - -0.6
2,690,551 - +0.7
2,690,582 + -1.0
2,690,588 - -1.2
2,690,593 - +1.6
2,690,806 - +1.0
2,692,420 - +0.6
2,692,440 + -0.4
2,692,453 + +0.4
2,692,543 + -1.7
2,692,565 + +1.0
2,692,672 - -1.3
2,692,698 + +1.4
2,692,698 + +0.7
2,692,748 + BT2139 0.14 +0.1
2,692,749 - BT2139 0.14 -1.2

Or see this region's nucleotide sequence