Experiment: DAC20_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0849 and BT0850 overlap by 4 nucleotides BT0850 and BT0851 are separated by 76 nucleotides BT0851 and BT0852 overlap by 4 nucleotides BT0852 and tRNA-Pro are separated by 210 nucleotides tRNA-Pro and tRNA-Pro are separated by 31 nucleotides tRNA-Pro and BT0853 are separated by 127 nucleotides
BT0849: BT0849 - hypothetical protein (NCBI ptt file), at 1,039,627 to 1,039,917
BT0849
BT0850: BT0850 - putative transcriptional regulator (NCBI ptt file), at 1,039,914 to 1,040,438
BT0850
BT0851: BT0851 - hypothetical protein (NCBI ptt file), at 1,040,515 to 1,040,889
BT0851
BT0852: BT0852 - hypothetical protein (NCBI ptt file), at 1,040,886 to 1,041,128
BT0852
BT_t12: tRNA-Pro - tRNA-Pro (RefSeq), at 1,041,339 to 1,041,416
tRNA-Pro
BT_t13: tRNA-Pro - tRNA-Pro (RefSeq), at 1,041,448 to 1,041,525
tRNA-Pro
BT0853: BT0853 - putative methyltransferase (NCBI ptt file), at 1,041,653 to 1,042,408
BT0853
Position (kb)
1040
1041 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1039.612 kb on + strand at 1039.621 kb on - strand at 1039.656 kb on + strand, within BT0849 at 1039.759 kb on - strand, within BT0849 at 1039.768 kb on - strand, within BT0849 at 1039.772 kb on + strand, within BT0849 at 1039.797 kb on + strand, within BT0849 at 1039.816 kb on + strand, within BT0849 at 1039.817 kb on - strand, within BT0849 at 1039.822 kb on + strand, within BT0849 at 1039.824 kb on + strand, within BT0849 at 1039.834 kb on - strand, within BT0849 at 1039.871 kb on + strand, within BT0849 at 1039.893 kb on - strand at 1039.961 kb on + strand at 1039.961 kb on + strand at 1039.983 kb on - strand, within BT0850 at 1040.128 kb on + strand, within BT0850 at 1040.297 kb on - strand, within BT0850 at 1040.342 kb on - strand, within BT0850 at 1040.353 kb on - strand, within BT0850 at 1040.375 kb on - strand, within BT0850 at 1040.378 kb on + strand, within BT0850 at 1040.492 kb on + strand at 1040.506 kb on - strand at 1040.612 kb on + strand, within BT0851 at 1040.623 kb on - strand, within BT0851 at 1040.663 kb on + strand, within BT0851 at 1040.678 kb on + strand, within BT0851 at 1040.678 kb on + strand, within BT0851 at 1040.705 kb on - strand, within BT0851 at 1040.786 kb on - strand, within BT0851 at 1040.880 kb on - strand at 1040.886 kb on - strand at 1040.896 kb on + strand at 1040.896 kb on + strand at 1040.896 kb on + strand at 1040.984 kb on + strand, within BT0852 at 1040.987 kb on - strand, within BT0852 at 1041.078 kb on - strand, within BT0852 at 1041.232 kb on + strand at 1041.253 kb on + strand at 1041.802 kb on - strand, within BT0853 at 1041.810 kb on - strand, within BT0853
Per-strain Table
Position Strand Gene LocusTag Fraction DAC20_cps8_0.1MOI remove 1,039,612 + -1.8 1,039,621 - -0.0 1,039,656 + BT0849 0.10 -1.6 1,039,759 - BT0849 0.45 +1.0 1,039,768 - BT0849 0.48 -0.6 1,039,772 + BT0849 0.50 -2.1 1,039,797 + BT0849 0.58 -1.0 1,039,816 + BT0849 0.65 -2.0 1,039,817 - BT0849 0.65 -0.0 1,039,822 + BT0849 0.67 -0.6 1,039,824 + BT0849 0.68 -3.5 1,039,834 - BT0849 0.71 +0.2 1,039,871 + BT0849 0.84 -0.3 1,039,893 - -2.0 1,039,961 + -0.4 1,039,961 + +1.0 1,039,983 - BT0850 0.13 -0.6 1,040,128 + BT0850 0.41 +0.9 1,040,297 - BT0850 0.73 -2.6 1,040,342 - BT0850 0.82 -1.4 1,040,353 - BT0850 0.84 -2.2 1,040,375 - BT0850 0.88 -1.7 1,040,378 + BT0850 0.88 +0.3 1,040,492 + -0.0 1,040,506 - -0.6 1,040,612 + BT0851 0.26 +0.8 1,040,623 - BT0851 0.29 +2.3 1,040,663 + BT0851 0.39 +2.5 1,040,678 + BT0851 0.43 +3.3 1,040,678 + BT0851 0.43 -0.0 1,040,705 - BT0851 0.51 +0.2 1,040,786 - BT0851 0.72 -0.9 1,040,880 - +0.4 1,040,886 - -0.6 1,040,896 + -0.3 1,040,896 + -0.4 1,040,896 + +0.2 1,040,984 + BT0852 0.40 -2.0 1,040,987 - BT0852 0.42 -0.8 1,041,078 - BT0852 0.79 -1.0 1,041,232 + +1.3 1,041,253 + +1.0 1,041,802 - BT0853 0.20 +0.5 1,041,810 - BT0853 0.21 +0.2
Or see this region's nucleotide sequence