Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0851

Experiment: DAC20_cps8_0.1MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0849 and BT0850 overlap by 4 nucleotidesBT0850 and BT0851 are separated by 76 nucleotidesBT0851 and BT0852 overlap by 4 nucleotidesBT0852 and tRNA-Pro are separated by 210 nucleotidestRNA-Pro and tRNA-Pro are separated by 31 nucleotidestRNA-Pro and BT0853 are separated by 127 nucleotides BT0849: BT0849 - hypothetical protein (NCBI ptt file), at 1,039,627 to 1,039,917 BT0849 BT0850: BT0850 - putative transcriptional regulator (NCBI ptt file), at 1,039,914 to 1,040,438 BT0850 BT0851: BT0851 - hypothetical protein (NCBI ptt file), at 1,040,515 to 1,040,889 BT0851 BT0852: BT0852 - hypothetical protein (NCBI ptt file), at 1,040,886 to 1,041,128 BT0852 BT_t12: tRNA-Pro - tRNA-Pro (RefSeq), at 1,041,339 to 1,041,416 tRNA-Pro BT_t13: tRNA-Pro - tRNA-Pro (RefSeq), at 1,041,448 to 1,041,525 tRNA-Pro BT0853: BT0853 - putative methyltransferase (NCBI ptt file), at 1,041,653 to 1,042,408 BT0853 Position (kb) 1040 1041Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1039.612 kb on + strandat 1039.621 kb on - strandat 1039.656 kb on + strand, within BT0849at 1039.759 kb on - strand, within BT0849at 1039.768 kb on - strand, within BT0849at 1039.772 kb on + strand, within BT0849at 1039.797 kb on + strand, within BT0849at 1039.816 kb on + strand, within BT0849at 1039.817 kb on - strand, within BT0849at 1039.822 kb on + strand, within BT0849at 1039.824 kb on + strand, within BT0849at 1039.834 kb on - strand, within BT0849at 1039.871 kb on + strand, within BT0849at 1039.893 kb on - strandat 1039.961 kb on + strandat 1039.961 kb on + strandat 1039.983 kb on - strand, within BT0850at 1040.128 kb on + strand, within BT0850at 1040.297 kb on - strand, within BT0850at 1040.342 kb on - strand, within BT0850at 1040.353 kb on - strand, within BT0850at 1040.375 kb on - strand, within BT0850at 1040.378 kb on + strand, within BT0850at 1040.492 kb on + strandat 1040.506 kb on - strandat 1040.612 kb on + strand, within BT0851at 1040.623 kb on - strand, within BT0851at 1040.663 kb on + strand, within BT0851at 1040.678 kb on + strand, within BT0851at 1040.678 kb on + strand, within BT0851at 1040.705 kb on - strand, within BT0851at 1040.786 kb on - strand, within BT0851at 1040.880 kb on - strandat 1040.886 kb on - strandat 1040.896 kb on + strandat 1040.896 kb on + strandat 1040.896 kb on + strandat 1040.984 kb on + strand, within BT0852at 1040.987 kb on - strand, within BT0852at 1041.078 kb on - strand, within BT0852at 1041.232 kb on + strandat 1041.253 kb on + strandat 1041.802 kb on - strand, within BT0853at 1041.810 kb on - strand, within BT0853

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Per-strain Table

Position Strand Gene LocusTag Fraction DAC20_cps8_0.1MOI
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1,039,612 + -1.8
1,039,621 - -0.0
1,039,656 + BT0849 0.10 -1.6
1,039,759 - BT0849 0.45 +1.0
1,039,768 - BT0849 0.48 -0.6
1,039,772 + BT0849 0.50 -2.1
1,039,797 + BT0849 0.58 -1.0
1,039,816 + BT0849 0.65 -2.0
1,039,817 - BT0849 0.65 -0.0
1,039,822 + BT0849 0.67 -0.6
1,039,824 + BT0849 0.68 -3.5
1,039,834 - BT0849 0.71 +0.2
1,039,871 + BT0849 0.84 -0.3
1,039,893 - -2.0
1,039,961 + -0.4
1,039,961 + +1.0
1,039,983 - BT0850 0.13 -0.6
1,040,128 + BT0850 0.41 +0.9
1,040,297 - BT0850 0.73 -2.6
1,040,342 - BT0850 0.82 -1.4
1,040,353 - BT0850 0.84 -2.2
1,040,375 - BT0850 0.88 -1.7
1,040,378 + BT0850 0.88 +0.3
1,040,492 + -0.0
1,040,506 - -0.6
1,040,612 + BT0851 0.26 +0.8
1,040,623 - BT0851 0.29 +2.3
1,040,663 + BT0851 0.39 +2.5
1,040,678 + BT0851 0.43 +3.3
1,040,678 + BT0851 0.43 -0.0
1,040,705 - BT0851 0.51 +0.2
1,040,786 - BT0851 0.72 -0.9
1,040,880 - +0.4
1,040,886 - -0.6
1,040,896 + -0.3
1,040,896 + -0.4
1,040,896 + +0.2
1,040,984 + BT0852 0.40 -2.0
1,040,987 - BT0852 0.42 -0.8
1,041,078 - BT0852 0.79 -1.0
1,041,232 + +1.3
1,041,253 + +1.0
1,041,802 - BT0853 0.20 +0.5
1,041,810 - BT0853 0.21 +0.2

Or see this region's nucleotide sequence