Experiment: DAC19_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0512 and BT0513 are separated by 44 nucleotides BT0513 and BT0514 are separated by 57 nucleotides BT0514 and BT0515 are separated by 702 nucleotides
BT0512: BT0512 - hypothetical protein (NCBI ptt file), at 635,370 to 635,939
BT0512
BT0513: BT0513 - hypothetical protein (NCBI ptt file), at 635,984 to 636,415
BT0513
BT0514: BT0514 - conserved hypothetical protein (NCBI ptt file), at 636,473 to 637,477
BT0514
BT0515: BT0515 - terminal quinol oxidase, subunit, putative (doxD-like) (NCBI ptt file), at 638,180 to 639,205
BT0515
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 635.524 kb on - strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.536 kb on + strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.607 kb on - strand, within BT0512 at 635.615 kb on + strand, within BT0512 at 635.763 kb on - strand, within BT0512 at 635.840 kb on + strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.939 kb on + strand at 635.943 kb on + strand at 636.008 kb on + strand at 636.093 kb on - strand, within BT0513 at 636.269 kb on + strand, within BT0513 at 636.274 kb on + strand, within BT0513 at 636.275 kb on - strand, within BT0513 at 636.280 kb on - strand, within BT0513 at 636.333 kb on - strand, within BT0513 at 636.344 kb on + strand, within BT0513 at 636.403 kb on + strand at 636.403 kb on + strand at 636.526 kb on + strand at 636.569 kb on - strand at 636.610 kb on - strand, within BT0514 at 636.738 kb on + strand, within BT0514 at 636.777 kb on - strand, within BT0514 at 636.835 kb on - strand, within BT0514 at 636.865 kb on - strand, within BT0514 at 636.909 kb on + strand, within BT0514 at 636.935 kb on + strand, within BT0514 at 636.962 kb on - strand, within BT0514 at 637.007 kb on - strand, within BT0514 at 637.062 kb on - strand, within BT0514 at 637.071 kb on - strand, within BT0514 at 637.071 kb on - strand, within BT0514 at 637.089 kb on + strand, within BT0514 at 637.090 kb on - strand, within BT0514 at 637.301 kb on + strand, within BT0514 at 637.302 kb on - strand, within BT0514 at 637.349 kb on + strand at 637.373 kb on - strand, within BT0514 at 637.571 kb on - strand at 637.581 kb on + strand at 637.696 kb on + strand at 637.804 kb on + strand at 637.805 kb on - strand at 637.822 kb on + strand at 637.896 kb on + strand at 638.021 kb on + strand at 638.062 kb on - strand at 638.066 kb on - strand at 638.067 kb on + strand at 638.074 kb on + strand at 638.219 kb on + strand at 638.220 kb on - strand at 638.285 kb on - strand, within BT0515 at 638.349 kb on + strand, within BT0515 at 638.461 kb on - strand, within BT0515
Per-strain Table
Position Strand Gene LocusTag Fraction DAC19_cps8_0.1MOI remove 635,524 - BT0512 0.27 -0.0 635,534 + BT0512 0.29 -2.2 635,534 + BT0512 0.29 -0.9 635,536 + BT0512 0.29 -0.0 635,597 - BT0512 0.40 -1.0 635,597 - BT0512 0.40 -1.9 635,607 - BT0512 0.42 -1.8 635,615 + BT0512 0.43 +1.0 635,763 - BT0512 0.69 +1.0 635,840 + BT0512 0.82 -1.0 635,854 - BT0512 0.85 -0.9 635,854 - BT0512 0.85 -0.9 635,939 + +1.0 635,943 + -0.8 636,008 + -1.0 636,093 - BT0513 0.25 +0.5 636,269 + BT0513 0.66 -0.0 636,274 + BT0513 0.67 -1.6 636,275 - BT0513 0.67 +0.2 636,280 - BT0513 0.69 -1.2 636,333 - BT0513 0.81 -0.8 636,344 + BT0513 0.83 -1.0 636,403 + -1.8 636,403 + -1.4 636,526 + -1.0 636,569 - +0.1 636,610 - BT0514 0.14 +3.0 636,738 + BT0514 0.26 +1.0 636,777 - BT0514 0.30 -2.0 636,835 - BT0514 0.36 -0.8 636,865 - BT0514 0.39 -0.4 636,909 + BT0514 0.43 -2.6 636,935 + BT0514 0.46 -1.6 636,962 - BT0514 0.49 +0.2 637,007 - BT0514 0.53 +0.5 637,062 - BT0514 0.59 +1.4 637,071 - BT0514 0.60 -0.6 637,071 - BT0514 0.60 +1.0 637,089 + BT0514 0.61 +0.5 637,090 - BT0514 0.61 -0.0 637,301 + BT0514 0.82 -0.6 637,302 - BT0514 0.82 -1.4 637,349 + -1.0 637,373 - BT0514 0.90 +1.5 637,571 - -0.2 637,581 + +0.2 637,696 + -0.0 637,804 + +0.8 637,805 - -0.9 637,822 + -2.2 637,896 + -0.0 638,021 + -0.2 638,062 - -1.8 638,066 - -2.8 638,067 + -0.6 638,074 + -1.4 638,219 + -0.6 638,220 - -0.6 638,285 - BT0515 0.10 +1.0 638,349 + BT0515 0.16 -0.2 638,461 - BT0515 0.27 -0.9
Or see this region's nucleotide sequence