Experiment: DAC16_cps7_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0187 and BT0188 are separated by 192 nucleotides BT0188 and BT0189 are separated by 87 nucleotides BT0189 and BT0190 are separated by 212 nucleotides
BT0187: BT0187 - conserved hypothetical protein (NCBI ptt file), at 197,341 to 198,045
BT0187
BT0188: BT0188 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 198,238 to 198,840
BT0188
BT0189: BT0189 - conserved hypothetical protein, putative anti-sigma factor (NCBI ptt file), at 198,928 to 199,911
BT0189
BT0190: BT0190 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 200,124 to 203,564
BT0190
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 198.121 kb on + strand at 198.122 kb on - strand at 198.210 kb on + strand at 198.242 kb on - strand at 198.332 kb on - strand, within BT0188 at 198.332 kb on - strand, within BT0188 at 198.467 kb on - strand, within BT0188 at 198.467 kb on - strand, within BT0188 at 198.471 kb on - strand, within BT0188 at 198.472 kb on + strand, within BT0188 at 198.681 kb on - strand, within BT0188 at 198.810 kb on - strand at 198.810 kb on - strand at 198.859 kb on + strand at 198.860 kb on - strand at 198.960 kb on - strand at 199.042 kb on - strand, within BT0189 at 199.120 kb on + strand, within BT0189 at 199.120 kb on + strand, within BT0189 at 199.153 kb on - strand, within BT0189 at 199.240 kb on - strand, within BT0189 at 199.240 kb on - strand, within BT0189 at 199.240 kb on - strand, within BT0189 at 199.528 kb on - strand, within BT0189 at 199.554 kb on - strand, within BT0189 at 199.554 kb on - strand, within BT0189 at 199.626 kb on - strand, within BT0189 at 199.711 kb on - strand, within BT0189 at 199.752 kb on + strand, within BT0189 at 199.753 kb on - strand, within BT0189 at 199.818 kb on + strand at 199.839 kb on + strand at 199.871 kb on - strand at 199.901 kb on - strand at 199.917 kb on - strand at 200.069 kb on - strand at 200.203 kb on + strand at 200.204 kb on - strand at 200.246 kb on + strand at 200.247 kb on - strand at 200.318 kb on + strand at 200.319 kb on - strand at 200.385 kb on - strand at 200.445 kb on - strand at 200.445 kb on - strand at 200.605 kb on - strand, within BT0190 at 200.749 kb on + strand, within BT0190 at 200.750 kb on - strand, within BT0190 at 200.750 kb on - strand, within BT0190 at 200.762 kb on - strand, within BT0190
Per-strain Table
Position Strand Gene LocusTag Fraction DAC16_cps7_0.1MOI remove 198,121 + -1.4 198,122 - +0.8 198,210 + -2.1 198,242 - -0.4 198,332 - BT0188 0.16 +0.7 198,332 - BT0188 0.16 -0.1 198,467 - BT0188 0.38 -0.8 198,467 - BT0188 0.38 +0.2 198,471 - BT0188 0.39 -3.0 198,472 + BT0188 0.39 -0.4 198,681 - BT0188 0.73 -0.7 198,810 - +0.1 198,810 - -1.4 198,859 + -0.1 198,860 - -0.7 198,960 - -0.7 199,042 - BT0189 0.12 -2.4 199,120 + BT0189 0.20 -1.7 199,120 + BT0189 0.20 -0.7 199,153 - BT0189 0.23 -1.7 199,240 - BT0189 0.32 -0.2 199,240 - BT0189 0.32 -1.7 199,240 - BT0189 0.32 -1.7 199,528 - BT0189 0.61 -1.1 199,554 - BT0189 0.64 +0.9 199,554 - BT0189 0.64 -0.9 199,626 - BT0189 0.71 -1.8 199,711 - BT0189 0.80 -1.4 199,752 + BT0189 0.84 +0.9 199,753 - BT0189 0.84 -0.9 199,818 + -1.9 199,839 + -1.3 199,871 - -1.9 199,901 - -0.4 199,917 - -0.8 200,069 - +0.3 200,203 + -2.3 200,204 - -1.1 200,246 + -1.0 200,247 - -0.5 200,318 + -1.2 200,319 - +0.1 200,385 - -1.9 200,445 - -0.7 200,445 - -1.4 200,605 - BT0190 0.14 +0.3 200,749 + BT0190 0.18 +0.8 200,750 - BT0190 0.18 -2.5 200,750 - BT0190 0.18 +0.3 200,762 - BT0190 0.19 -0.1
Or see this region's nucleotide sequence