Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3698

Experiment: DAC15 _cps3_0.1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DAC15 _cps3_0.1MOI
4,800,706	+				-1.7
4,800,708	+				-1.4
4,800,710	+				-2.0
4,800,710	+				+0.7
4,800,738	-				-1.1
4,800,768	+				-0.1
4,800,770	+				-1.6
4,800,771	-				+0.0
4,800,790	+				+0.5
4,800,790	+				-0.9
4,800,791	-				-0.6
4,800,791	-				+0.0
4,800,791	-				+0.6
4,800,840	+				+2.0
4,800,891	+				-1.6
4,800,895	-				-1.6
4,800,895	-				+0.0
4,800,905	-				+1.4
4,800,925	+				+0.0
4,800,926	-				+1.0
4,801,061	+				+0.4
4,801,062	-				-0.1
4,801,108	+	SusG	BT3698	0.11	+0.0
4,801,116	-	SusG	BT3698	0.12	-2.2
4,801,127	+	SusG	BT3698	0.12	+0.2
4,801,151	-	SusG	BT3698	0.13	-1.5
4,801,181	-	SusG	BT3698	0.15	-1.1
4,801,268	-	SusG	BT3698	0.19	+0.0
4,801,275	-	SusG	BT3698	0.19	-0.4
4,801,279	+	SusG	BT3698	0.20	-0.6
4,801,279	+	SusG	BT3698	0.20	-1.0
4,801,279	+	SusG	BT3698	0.20	+0.0
4,801,279	+	SusG	BT3698	0.20	+2.8
4,801,279	+	SusG	BT3698	0.20	-0.5
4,801,283	+	SusG	BT3698	0.20	+1.0
4,801,363	+	SusG	BT3698	0.24	-0.9
4,801,369	+	SusG	BT3698	0.24	-2.0
4,801,370	-	SusG	BT3698	0.24	-1.2
4,801,448	+	SusG	BT3698	0.28	-0.2
4,801,467	-	SusG	BT3698	0.29	+0.4
4,801,559	+	SusG	BT3698	0.33	-2.8
4,801,563	-	SusG	BT3698	0.33	-1.7
4,801,624	+	SusG	BT3698	0.36	-0.1
4,801,628	-	SusG	BT3698	0.36	-0.7
4,801,635	+	SusG	BT3698	0.37	+0.0
4,801,635	+	SusG	BT3698	0.37	+0.2
4,801,635	+	SusG	BT3698	0.37	-1.6
4,801,636	-	SusG	BT3698	0.37	-1.8
4,801,636	-	SusG	BT3698	0.37	-1.4
4,801,670	+	SusG	BT3698	0.38	-1.6
4,801,671	-	SusG	BT3698	0.38	+0.9
4,801,672	+	SusG	BT3698	0.38	-1.0
4,801,672	+	SusG	BT3698	0.38	+1.0
4,801,672	+	SusG	BT3698	0.38	-1.2
4,801,672	+	SusG	BT3698	0.38	+0.4
4,801,673	-	SusG	BT3698	0.38	-1.1
4,801,686	-	SusG	BT3698	0.39	-0.3
4,801,703	-	SusG	BT3698	0.40	-1.0
4,801,706	-	SusG	BT3698	0.40	-0.2
4,801,715	+	SusG	BT3698	0.41	-1.6
4,801,716	-	SusG	BT3698	0.41	-1.9
4,801,771	+	SusG	BT3698	0.43	-0.3
4,801,888	+	SusG	BT3698	0.49	-1.6
4,801,889	-	SusG	BT3698	0.49	-0.5
4,801,893	-	SusG	BT3698	0.49	-1.3
4,801,933	+	SusG	BT3698	0.51	-0.4
4,801,934	-	SusG	BT3698	0.51	-1.9
4,802,072	+	SusG	BT3698	0.58	+0.2
4,802,170	+	SusG	BT3698	0.62	+1.0
4,802,174	-				+0.0
4,802,180	-	SusG	BT3698	0.63	-0.7
4,802,279	+	SusG	BT3698	0.68	-0.3
4,802,422	+	SusG	BT3698	0.75	-2.2
4,802,426	-	SusG	BT3698	0.75	-1.6
4,802,457	-	SusG	BT3698	0.76	-0.6
4,802,499	+	SusG	BT3698	0.78	-1.0
4,802,499	+	SusG	BT3698	0.78	-1.3
4,802,512	+	SusG	BT3698	0.79	-2.0
4,802,543	+	SusG	BT3698	0.80	-1.3
4,802,597	-	SusG	BT3698	0.83	-0.5
4,802,627	+	SusG	BT3698	0.84	-2.8
4,802,746	+				-1.9
4,802,754	+				-3.0
4,802,811	-				-1.8
4,802,962	+				-1.7
4,802,963	-				+1.2
4,802,974	+				+1.0
4,803,019	-				-2.7
4,803,057	-				+0.7
4,803,057	-				-2.4
4,803,059	+				+0.4
4,803,059	+				+1.8
4,803,160	+				-2.4
4,803,161	-				+2.6
4,803,238	+	SusF	BT3699	0.12	+0.7
4,803,238	+				+0.0
4,803,301	-	SusF	BT3699	0.16	-1.6
4,803,301	-	SusF	BT3699	0.16	+0.4
4,803,316	+	SusF	BT3699	0.17	-1.8
4,803,317	-	SusF	BT3699	0.18	+1.0
4,803,341	+	SusF	BT3699	0.19	-1.3
4,803,341	+	SusF	BT3699	0.19	-1.0
4,803,341	+	SusF	BT3699	0.19	-0.9
4,803,364	+	SusF	BT3699	0.21	-1.3
4,803,365	-	SusF	BT3699	0.21	+1.0
4,803,416	+	SusF	BT3699	0.24	-2.3
4,803,421	+	SusF	BT3699	0.25	-1.2
4,803,422	-	SusF	BT3699	0.25	-0.2
4,803,438	+	SusF	BT3699	0.26	-0.6
4,803,501	+	SusF	BT3699	0.30	-1.2
4,803,501	+	SusF	BT3699	0.30	+0.6
4,803,771	+	SusF	BT3699	0.49	+1.4
4,803,829	+	SusF	BT3699	0.53	-0.3
4,803,834	+	SusF	BT3699	0.53	-1.3
4,803,835	-	SusF	BT3699	0.53	-0.9
4,803,860	-	SusF	BT3699	0.55	-1.1
4,803,876	+	SusF	BT3699	0.56	-1.0
4,803,935	+	SusF	BT3699	0.60	-1.3
4,803,936	-	SusF	BT3699	0.60	-1.1