Experiment: SJC15_cps8_1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4449 and BT4450 are separated by 21 nucleotides BT4450 and BT4451 are separated by 149 nucleotides BT4451 and BT4452 overlap by 31 nucleotides
BT4449: BT4449 - putative dehydrogenase (NCBI ptt file), at 5,860,833 to 5,861,900
BT4449
BT4450: BT4450 - conserved hypothetical protein (NCBI ptt file), at 5,861,922 to 5,863,157
BT4450
BT4451: BT4451 - putative MTA/SAH nucleosidase (NCBI ptt file), at 5,863,307 to 5,863,873
BT4451
BT4452: BT4452 - conserved hypothetical protein (NCBI ptt file), at 5,863,843 to 5,864,202
BT4452
Position (kb) 5861
5862
5863
5864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5860.935 kb on - strand at 5860.935 kb on - strand at 5861.040 kb on + strand, within BT4449 at 5861.182 kb on + strand, within BT4449 at 5861.306 kb on + strand, within BT4449 at 5861.335 kb on + strand, within BT4449 at 5861.367 kb on + strand, within BT4449 at 5861.371 kb on + strand at 5861.372 kb on - strand, within BT4449 at 5861.493 kb on - strand, within BT4449 at 5861.599 kb on - strand, within BT4449 at 5861.630 kb on + strand, within BT4449 at 5861.631 kb on - strand, within BT4449 at 5861.931 kb on + strand at 5861.931 kb on + strand at 5861.962 kb on + strand at 5861.962 kb on + strand at 5861.964 kb on + strand at 5861.964 kb on + strand at 5862.075 kb on + strand, within BT4450 at 5862.075 kb on + strand, within BT4450 at 5862.087 kb on + strand, within BT4450 at 5862.088 kb on - strand, within BT4450 at 5862.149 kb on + strand, within BT4450 at 5862.150 kb on - strand, within BT4450 at 5862.248 kb on + strand, within BT4450 at 5862.475 kb on + strand, within BT4450 at 5862.478 kb on + strand, within BT4450 at 5862.485 kb on + strand, within BT4450 at 5862.517 kb on - strand, within BT4450 at 5862.517 kb on - strand, within BT4450 at 5862.517 kb on - strand, within BT4450 at 5862.553 kb on + strand, within BT4450 at 5862.565 kb on + strand, within BT4450 at 5862.658 kb on + strand, within BT4450 at 5862.658 kb on + strand, within BT4450 at 5862.659 kb on - strand, within BT4450 at 5862.665 kb on - strand, within BT4450 at 5862.687 kb on - strand, within BT4450 at 5862.688 kb on + strand, within BT4450 at 5862.695 kb on + strand, within BT4450 at 5862.695 kb on + strand, within BT4450 at 5862.696 kb on - strand, within BT4450 at 5862.849 kb on - strand, within BT4450 at 5862.948 kb on + strand, within BT4450 at 5863.044 kb on - strand at 5863.074 kb on + strand at 5863.160 kb on + strand at 5863.160 kb on + strand at 5863.161 kb on - strand at 5863.180 kb on + strand at 5863.260 kb on - strand at 5863.289 kb on + strand at 5863.289 kb on + strand at 5863.324 kb on - strand at 5863.372 kb on - strand, within BT4451 at 5863.382 kb on + strand, within BT4451 at 5863.383 kb on - strand, within BT4451 at 5863.500 kb on + strand, within BT4451 at 5863.508 kb on - strand, within BT4451 at 5863.681 kb on - strand, within BT4451 at 5863.710 kb on - strand, within BT4451 at 5863.763 kb on + strand, within BT4451 at 5863.869 kb on + strand at 5863.870 kb on - strand at 5863.874 kb on + strand at 5863.874 kb on + strand at 5863.875 kb on - strand at 5863.946 kb on + strand, within BT4452 at 5863.947 kb on - strand, within BT4452 at 5864.066 kb on + strand, within BT4452 at 5864.068 kb on + strand, within BT4452 at 5864.068 kb on + strand, within BT4452 at 5864.069 kb on - strand, within BT4452 at 5864.091 kb on - strand, within BT4452 at 5864.107 kb on + strand, within BT4452
Per-strain Table
Position Strand Gene LocusTag Fraction SJC15_cps8_1MOI remove 5,860,935 - +0.0 5,860,935 - -1.0 5,861,040 + BT4449 0.19 -0.2 5,861,182 + BT4449 0.33 +0.5 5,861,306 + BT4449 0.44 +0.3 5,861,335 + BT4449 0.47 -2.0 5,861,367 + BT4449 0.50 -1.5 5,861,371 + -1.8 5,861,372 - BT4449 0.50 -0.3 5,861,493 - BT4449 0.62 -1.0 5,861,599 - BT4449 0.72 +0.5 5,861,630 + BT4449 0.75 -0.7 5,861,631 - BT4449 0.75 -1.8 5,861,931 + -2.1 5,861,931 + -1.9 5,861,962 + +0.6 5,861,962 + +1.6 5,861,964 + +1.0 5,861,964 + -2.1 5,862,075 + BT4450 0.12 -2.8 5,862,075 + BT4450 0.12 -0.8 5,862,087 + BT4450 0.13 -1.8 5,862,088 - BT4450 0.13 -1.0 5,862,149 + BT4450 0.18 +0.0 5,862,150 - BT4450 0.18 +1.0 5,862,248 + BT4450 0.26 +0.0 5,862,475 + BT4450 0.45 -1.7 5,862,478 + BT4450 0.45 +0.5 5,862,485 + BT4450 0.46 +0.8 5,862,517 - BT4450 0.48 -3.5 5,862,517 - BT4450 0.48 -1.3 5,862,517 - BT4450 0.48 +0.0 5,862,553 + BT4450 0.51 +1.3 5,862,565 + BT4450 0.52 -1.3 5,862,658 + BT4450 0.60 +0.6 5,862,658 + BT4450 0.60 -2.7 5,862,659 - BT4450 0.60 +1.2 5,862,665 - BT4450 0.60 +1.0 5,862,687 - BT4450 0.62 -1.3 5,862,688 + BT4450 0.62 -2.1 5,862,695 + BT4450 0.63 -1.0 5,862,695 + BT4450 0.63 +0.6 5,862,696 - BT4450 0.63 -1.8 5,862,849 - BT4450 0.75 -0.4 5,862,948 + BT4450 0.83 +2.5 5,863,044 - -2.4 5,863,074 + +0.0 5,863,160 + -2.1 5,863,160 + -0.2 5,863,161 - +0.4 5,863,180 + +1.0 5,863,260 - +0.6 5,863,289 + -2.4 5,863,289 + +0.5 5,863,324 - -3.5 5,863,372 - BT4451 0.11 -1.3 5,863,382 + BT4451 0.13 +0.6 5,863,383 - BT4451 0.13 -2.4 5,863,500 + BT4451 0.34 +0.0 5,863,508 - BT4451 0.35 -0.6 5,863,681 - BT4451 0.66 -3.2 5,863,710 - BT4451 0.71 -2.3 5,863,763 + BT4451 0.80 -1.1 5,863,869 + -2.7 5,863,870 - -1.3 5,863,874 + -0.4 5,863,874 + -2.0 5,863,875 - -1.6 5,863,946 + BT4452 0.29 +0.0 5,863,947 - BT4452 0.29 +0.4 5,864,066 + BT4452 0.62 -0.6 5,864,068 + BT4452 0.62 +1.0 5,864,068 + BT4452 0.62 -1.6 5,864,069 - BT4452 0.63 -0.6 5,864,091 - BT4452 0.69 +0.0 5,864,107 + BT4452 0.73 -2.6
Or see this region's nucleotide sequence