Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4013

Experiment: SJC15_cps8_1MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SJC15_cps8_1MOI
5,227,272	-		BT4012	0.43	-1.3
5,227,301	-		BT4012	0.45	-1.8
5,227,301	-		BT4012	0.45	-0.3
5,227,342	-		BT4012	0.48	-1.9
5,227,347	-		BT4012	0.49	+0.4
5,227,347	-		BT4012	0.49	-0.6
5,227,411	+		BT4012	0.54	-1.7
5,227,455	-		BT4012	0.57	+1.0
5,227,493	-		BT4012	0.60	+0.8
5,227,540	+		BT4012	0.64	-2.1
5,227,541	-		BT4012	0.64	-1.6
5,227,573	+		BT4012	0.66	-0.2
5,227,597	+		BT4012	0.68	-0.6
5,227,599	+		BT4012	0.68	+1.4
5,227,599	+		BT4012	0.68	-0.9
5,227,605	+		BT4012	0.69	+1.4
5,227,616	+		BT4012	0.70	-1.8
5,227,634	+		BT4012	0.71	-1.0
5,227,701	-		BT4012	0.76	+1.5
5,227,717	+		BT4012	0.78	-2.7
5,227,729	-		BT4012	0.79	-0.7
5,227,729	-		BT4012	0.79	-1.0
5,227,734	+		BT4012	0.79	-2.1
5,227,742	-		BT4012	0.80	-0.6
5,227,750	+		BT4012	0.80	-2.2
5,227,766	+		BT4012	0.81	-1.9
5,227,809	+		BT4012	0.85	+2.0
5,227,882	+				+2.2
5,227,917	-				-1.6
5,227,989	+				+0.5
5,227,992	-				-1.6
5,228,062	+				+1.6
5,228,071	+				-2.9
5,228,071	+				-0.6
5,228,075	+				-0.8
5,228,082	+				+1.0
5,228,083	-				-2.1
5,228,087	-				+0.9
5,228,123	+				+0.1
5,228,124	-				-1.8
5,228,124	-				-0.9
5,228,125	+				-1.7
5,228,125	+				-3.3
5,228,125	+				+0.2
5,228,191	-				+0.1
5,228,217	+				-0.8
5,228,217	+				-1.2
5,228,307	+				-1.6
5,228,307	+				-1.6
5,228,386	+				-1.0
5,228,387	-				-1.6
5,228,390	+				+2.3
5,228,390	+				+0.5
5,228,462	+				+0.7
5,228,463	-				+0.2
5,228,503	+		BT4013	0.10	-1.6
5,228,506	-		BT4013	0.10	-1.1
5,228,506	-		BT4013	0.10	-1.3
5,228,506	-		BT4013	0.10	+2.9
5,228,506	-		BT4013	0.10	-0.4
5,228,506	-		BT4013	0.10	-0.2
5,228,506	-		BT4013	0.10	-0.4
5,228,528	-		BT4013	0.11	-1.0
5,228,528	-		BT4013	0.11	-1.6
5,228,604	-		BT4013	0.13	-0.6
5,228,609	-		BT4013	0.13	-0.6
5,228,660	+		BT4013	0.14	+0.3
5,228,661	-		BT4013	0.14	+0.8
5,228,672	+		BT4013	0.14	+3.0
5,228,683	-		BT4013	0.15	+1.4
5,228,683	-		BT4013	0.15	-1.9
5,228,687	+		BT4013	0.15	+1.0
5,228,688	-		BT4013	0.15	-0.9
5,228,692	+		BT4013	0.15	-3.2
5,228,785	-		BT4013	0.17	-0.1
5,228,800	-		BT4013	0.18	-1.7
5,228,800	-		BT4013	0.18	-3.5
5,228,805	+		BT4013	0.18	-1.1
5,228,805	+		BT4013	0.18	-1.8
5,228,806	-		BT4013	0.18	-1.6
5,228,809	+		BT4013	0.18	-0.5
5,229,002	-		BT4013	0.23	+1.4
5,229,012	+		BT4013	0.23	-0.6
5,229,012	+		BT4013	0.23	+1.8
5,229,054	-		BT4013	0.24	+2.7
5,229,058	+		BT4013	0.24	+1.3
5,229,059	-		BT4013	0.24	-2.0
5,229,111	+		BT4013	0.25	-3.2
5,229,122	-		BT4013	0.26	-3.4
5,229,146	-		BT4013	0.26	-0.8
5,229,178	+		BT4013	0.27	-0.7
5,229,182	+		BT4013	0.27	-1.6
5,229,228	-		BT4013	0.28	+0.3
5,229,228	-		BT4013	0.28	+1.4
5,229,240	+		BT4013	0.29	+0.6
5,229,240	+		BT4013	0.29	-1.5
5,229,252	-		BT4013	0.29	+0.6
5,229,354	-		BT4013	0.31	-1.5
5,229,355	+		BT4013	0.31	+0.4
5,229,356	-		BT4013	0.31	+0.8
5,229,433	-		BT4013	0.33	-0.1
5,229,441	+		BT4013	0.34	+2.6
5,229,443	+		BT4013	0.34	-3.1
5,229,444	-		BT4013	0.34	-1.3
5,229,503	+		BT4013	0.35	+1.0
5,229,550	-		BT4013	0.36	-3.0
5,229,568	+		BT4013	0.37	+2.0
5,229,569	-		BT4013	0.37	-1.8
5,229,569	-		BT4013	0.37	-0.5
5,229,598	+		BT4013	0.37	-0.6
5,229,659	+		BT4013	0.39	-0.1
5,229,659	+		BT4013	0.39	+0.0
5,229,670	+		BT4013	0.39	-3.3
5,229,749	+		BT4013	0.41	+1.5
5,229,750	-		BT4013	0.41	+0.3
5,229,763	-		BT4013	0.42	-1.8
5,229,864	-		BT4013	0.44	-2.2
5,230,069	-		BT4013	0.49	+0.5
5,230,205	-		BT4013	0.53	-0.6
5,230,207	-		BT4013	0.53	-0.0
5,230,207	-		BT4013	0.53	-1.0
5,230,261	+		BT4013	0.54	-2.7
5,230,261	+		BT4013	0.54	+0.3
5,230,262	-		BT4013	0.54	-1.8
5,230,283	+		BT4013	0.55	+0.4
5,230,284	-		BT4013	0.55	+0.9
5,230,452	+		BT4013	0.59	-1.1
5,230,452	+		BT4013	0.59	-0.6
5,230,453	-		BT4013	0.59	-3.0
5,230,453	-		BT4013	0.59	-2.6
5,230,516	+		BT4013	0.60	-0.3
5,230,517	-		BT4013	0.60	-0.3
5,230,519	-		BT4013	0.61	+0.2
5,230,519	-		BT4013	0.61	+1.0
5,230,539	+		BT4013	0.61	+0.3
5,230,559	+		BT4013	0.62	-1.3
5,230,560	-		BT4013	0.62	-1.3
5,230,560	-		BT4013	0.62	-0.6
5,230,622	-		BT4013	0.63	-0.9
5,230,736	+		BT4013	0.66	-1.0
5,230,737	-		BT4013	0.66	-0.6
5,230,755	-		BT4013	0.66	-1.1
5,230,804	+		BT4013	0.68	+1.7
5,231,006	-		BT4013	0.73	-0.7
5,231,008	-		BT4013	0.73	-1.3
5,231,352	+		BT4013	0.81	+1.0
5,231,442	+		BT4013	0.84	-0.1
5,231,442	+		BT4013	0.84	-2.0
5,231,448	-		BT4013	0.84	-0.7
5,231,497	+		BT4013	0.85	-1.6
5,231,497	+		BT4013	0.85	+2.0
5,231,497	+		BT4013	0.85	-0.7
5,231,593	+		BT4013	0.87	+1.9
5,231,652	-		BT4013	0.89	-2.4
5,231,885	-				-1.6
5,231,887	-				+1.2
5,231,889	-				-1.9
5,231,889	-				-1.2
5,231,889	-				-0.6
5,231,906	-				+2.4
5,232,032	-				-0.6
5,232,060	+				-1.8
5,232,110	+				+0.0
5,232,335	+		BT4014	0.23	+3.2
5,232,354	+		BT4014	0.25	-2.4
5,232,363	+		BT4014	0.25	-1.8
5,232,452	+		BT4014	0.34	+0.5
5,232,452	+		BT4014	0.34	-0.4
5,232,452	+		BT4014	0.34	+1.0
5,232,480	+		BT4014	0.37	-1.3
5,232,490	+		BT4014	0.38	-2.1
5,232,490	+		BT4014	0.38	+1.6
5,232,554	+		BT4014	0.44	-3.0
5,232,554	+		BT4014	0.44	-2.0
5,232,569	+		BT4014	0.46	-0.6
5,232,678	+		BT4014	0.56	-0.6
5,232,736	+		BT4014	0.62	-0.7
5,232,736	+		BT4014	0.62	-1.8
5,232,736	+		BT4014	0.62	-1.4
5,232,759	+		BT4014	0.64	-2.4
5,232,762	+		BT4014	0.65	-2.2
5,232,827	+		BT4014	0.71	-2.1
5,232,827	+		BT4014	0.71	+0.0
5,232,913	+		BT4014	0.80	-0.6
5,232,913	+		BT4014	0.80	-2.3
5,232,929	+		BT4014	0.81	+0.3
5,232,929	+		BT4014	0.81	+2.0
5,232,979	+		BT4014	0.86	+1.0
5,233,036	+				+0.3
5,233,036	+				-1.0