Experiment: SJC15_cps8_1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0788 and BT0789 are separated by 199 nucleotides BT0789 and BT0790 are separated by 50 nucleotides
BT0788: BT0788 - succinyl-CoA synthetase beta chain (NCBI ptt file), at 977,227 to 978,357
BT0788
BT0789: BT0789 - malonyl CoA-acyl carrier protein transacylase (NCBI ptt file), at 978,557 to 979,444
BT0789
BT0790: BT0790 - phosphomethylpyrimidine kinase (NCBI ptt file), at 979,495 to 980,331
BT0790
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 977.571 kb on + strand, within BT0788 at 977.590 kb on + strand, within BT0788 at 977.595 kb on + strand, within BT0788 at 977.604 kb on + strand, within BT0788 at 977.624 kb on + strand, within BT0788 at 977.718 kb on + strand, within BT0788 at 977.718 kb on + strand, within BT0788 at 977.755 kb on + strand, within BT0788 at 977.756 kb on - strand, within BT0788 at 978.054 kb on - strand, within BT0788 at 978.054 kb on - strand, within BT0788 at 978.092 kb on - strand, within BT0788 at 978.139 kb on - strand, within BT0788 at 978.150 kb on - strand, within BT0788 at 978.165 kb on + strand, within BT0788 at 978.254 kb on + strand at 978.254 kb on + strand at 978.286 kb on + strand at 978.350 kb on - strand at 978.386 kb on - strand at 978.386 kb on - strand at 978.457 kb on + strand at 978.457 kb on + strand at 978.523 kb on + strand at 978.524 kb on - strand at 978.542 kb on + strand at 978.559 kb on - strand at 979.573 kb on + strand at 979.573 kb on + strand at 979.573 kb on + strand at 979.608 kb on + strand, within BT0790 at 979.721 kb on - strand, within BT0790 at 979.737 kb on - strand, within BT0790 at 979.742 kb on + strand, within BT0790 at 979.765 kb on + strand, within BT0790 at 979.925 kb on - strand, within BT0790 at 980.018 kb on + strand, within BT0790 at 980.240 kb on - strand, within BT0790 at 980.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SJC15_cps8_1MOI remove 977,571 + BT0788 0.30 +2.0 977,590 + BT0788 0.32 -2.4 977,595 + BT0788 0.33 -2.0 977,604 + BT0788 0.33 +0.0 977,624 + BT0788 0.35 -1.5 977,718 + BT0788 0.43 -0.6 977,718 + BT0788 0.43 -0.5 977,755 + BT0788 0.47 +1.8 977,756 - BT0788 0.47 +0.5 978,054 - BT0788 0.73 -1.0 978,054 - BT0788 0.73 -1.3 978,092 - BT0788 0.76 -0.5 978,139 - BT0788 0.81 -1.4 978,150 - BT0788 0.82 +0.0 978,165 + BT0788 0.83 +0.1 978,254 + -0.7 978,254 + -1.4 978,286 + -2.4 978,350 - +1.0 978,386 - +0.5 978,386 - +0.0 978,457 + +0.6 978,457 + +1.0 978,523 + +1.0 978,524 - -0.4 978,542 + -1.0 978,559 - -0.8 979,573 + +0.5 979,573 + -1.8 979,573 + -1.1 979,608 + BT0790 0.14 +1.3 979,721 - BT0790 0.27 +0.2 979,737 - BT0790 0.29 +1.2 979,742 + BT0790 0.30 -1.3 979,765 + BT0790 0.32 +2.8 979,925 - BT0790 0.51 -1.0 980,018 + BT0790 0.62 +0.0 980,240 - BT0790 0.89 -0.5 980,412 - -1.5
Or see this region's nucleotide sequence