Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_814

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_812 and Pf6N2E2_813 are separated by 77 nucleotidesPf6N2E2_813 and Pf6N2E2_814 are separated by 212 nucleotidesPf6N2E2_814 and Pf6N2E2_815 overlap by 30 nucleotides Pf6N2E2_812 - Glycosyltransferase, at 944,886 to 946,178 _812 Pf6N2E2_813 - Response regulator, at 946,256 to 946,561 _813 Pf6N2E2_814 - hypothetical protein, at 946,774 to 946,917 _814 Pf6N2E2_815 - Signal transduction histidine kinase, at 946,888 to 950,370 _815 Position (kb) 946 947Strain fitness (log2 ratio) -3 -2 -1 0 1at 946.138 kb on + strandat 946.138 kb on + strandat 946.138 kb on + strandat 946.138 kb on + strandat 946.139 kb on - strandat 946.342 kb on + strand, within Pf6N2E2_813at 946.343 kb on - strand, within Pf6N2E2_813at 946.527 kb on + strand, within Pf6N2E2_813at 946.527 kb on + strand, within Pf6N2E2_813at 946.527 kb on + strand, within Pf6N2E2_813at 946.527 kb on + strand, within Pf6N2E2_813at 946.527 kb on + strand, within Pf6N2E2_813at 946.627 kb on + strandat 946.628 kb on - strandat 946.628 kb on - strandat 946.628 kb on - strandat 946.628 kb on - strandat 946.628 kb on - strandat 946.628 kb on - strandat 946.628 kb on - strandat 946.690 kb on + strandat 946.690 kb on + strandat 946.690 kb on + strandat 946.691 kb on - strandat 946.724 kb on - strandat 946.737 kb on + strandat 946.737 kb on + strandat 946.738 kb on - strandat 946.739 kb on + strandat 946.740 kb on - strandat 946.742 kb on + strandat 946.775 kb on + strandat 946.776 kb on - strandat 946.782 kb on + strandat 946.819 kb on + strand, within Pf6N2E2_814at 946.819 kb on + strand, within Pf6N2E2_814at 946.819 kb on + strand, within Pf6N2E2_814at 946.819 kb on + strand, within Pf6N2E2_814at 946.820 kb on - strand, within Pf6N2E2_814at 946.820 kb on - strand, within Pf6N2E2_814at 946.820 kb on - strand, within Pf6N2E2_814at 946.820 kb on - strand, within Pf6N2E2_814at 946.944 kb on + strandat 946.944 kb on + strandat 946.944 kb on + strandat 947.005 kb on + strandat 947.005 kb on + strandat 947.005 kb on + strandat 947.006 kb on - strandat 947.146 kb on + strandat 947.184 kb on + strandat 947.185 kb on - strandat 947.185 kb on - strandat 947.240 kb on + strand, within Pf6N2E2_815at 947.240 kb on + strand, within Pf6N2E2_815at 947.240 kb on + strand, within Pf6N2E2_815at 947.241 kb on - strand, within Pf6N2E2_815at 947.241 kb on - strand, within Pf6N2E2_815at 947.241 kb on - strand, within Pf6N2E2_815at 947.241 kb on - strand, within Pf6N2E2_815at 947.270 kb on - strand, within Pf6N2E2_815at 947.270 kb on - strand, within Pf6N2E2_815at 947.458 kb on + strand, within Pf6N2E2_815at 947.458 kb on + strand, within Pf6N2E2_815at 947.459 kb on - strand, within Pf6N2E2_815at 947.497 kb on + strand, within Pf6N2E2_815at 947.498 kb on - strand, within Pf6N2E2_815at 947.498 kb on - strand, within Pf6N2E2_815at 947.536 kb on + strand, within Pf6N2E2_815at 947.536 kb on + strand, within Pf6N2E2_815at 947.537 kb on - strand, within Pf6N2E2_815at 947.537 kb on - strand, within Pf6N2E2_815at 947.537 kb on - strand, within Pf6N2E2_815at 947.537 kb on - strand, within Pf6N2E2_815at 947.668 kb on - strand, within Pf6N2E2_815at 947.668 kb on - strand, within Pf6N2E2_815at 947.689 kb on + strand, within Pf6N2E2_815at 947.690 kb on - strand, within Pf6N2E2_815at 947.716 kb on + strand, within Pf6N2E2_815at 947.758 kb on + strand, within Pf6N2E2_815at 947.758 kb on + strand, within Pf6N2E2_815at 947.759 kb on - strand, within Pf6N2E2_815at 947.759 kb on - strand, within Pf6N2E2_815at 947.814 kb on + strand, within Pf6N2E2_815at 947.815 kb on - strand, within Pf6N2E2_815at 947.864 kb on + strand, within Pf6N2E2_815

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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946,138 + -0.6
946,138 + +0.7
946,138 + -0.9
946,138 + +0.7
946,139 - +0.7
946,342 + Pf6N2E2_813 0.28 -1.3
946,343 - Pf6N2E2_813 0.28 -1.3
946,527 + Pf6N2E2_813 0.89 +1.3
946,527 + Pf6N2E2_813 0.89 +1.0
946,527 + Pf6N2E2_813 0.89 +0.7
946,527 + Pf6N2E2_813 0.89 -0.3
946,527 + Pf6N2E2_813 0.89 +0.7
946,627 + -0.3
946,628 - +0.7
946,628 - -0.3
946,628 - +0.7
946,628 - +0.7
946,628 - -1.3
946,628 - +0.7
946,628 - +0.7
946,690 + +0.7
946,690 + +0.7
946,690 + -0.9
946,691 - +0.7
946,724 - +0.7
946,737 + +0.7
946,737 + +0.4
946,738 - +0.7
946,739 + +0.7
946,740 - -2.3
946,742 + -1.6
946,775 + -1.3
946,776 - -0.3
946,782 + -0.3
946,819 + Pf6N2E2_814 0.31 +1.7
946,819 + Pf6N2E2_814 0.31 +0.7
946,819 + Pf6N2E2_814 0.31 +0.2
946,819 + Pf6N2E2_814 0.31 +0.7
946,820 - Pf6N2E2_814 0.32 -1.9
946,820 - Pf6N2E2_814 0.32 -3.5
946,820 - Pf6N2E2_814 0.32 +0.3
946,820 - Pf6N2E2_814 0.32 -0.3
946,944 + -0.9
946,944 + +0.7
946,944 + +0.7
947,005 + +0.7
947,005 + -0.3
947,005 + +0.7
947,006 - -1.6
947,146 + +0.7
947,184 + -1.3
947,185 - +0.7
947,185 - -0.9
947,240 + Pf6N2E2_815 0.10 +0.7
947,240 + Pf6N2E2_815 0.10 -0.3
947,240 + Pf6N2E2_815 0.10 +0.7
947,241 - Pf6N2E2_815 0.10 -1.6
947,241 - Pf6N2E2_815 0.10 +0.4
947,241 - Pf6N2E2_815 0.10 +0.6
947,241 - Pf6N2E2_815 0.10 -0.3
947,270 - Pf6N2E2_815 0.11 +0.7
947,270 - Pf6N2E2_815 0.11 -1.3
947,458 + Pf6N2E2_815 0.16 +0.7
947,458 + Pf6N2E2_815 0.16 -0.3
947,459 - Pf6N2E2_815 0.16 -0.9
947,497 + Pf6N2E2_815 0.17 -0.0
947,498 - Pf6N2E2_815 0.18 -0.3
947,498 - Pf6N2E2_815 0.18 -0.3
947,536 + Pf6N2E2_815 0.19 +0.7
947,536 + Pf6N2E2_815 0.19 -0.3
947,537 - Pf6N2E2_815 0.19 +0.5
947,537 - Pf6N2E2_815 0.19 -1.6
947,537 - Pf6N2E2_815 0.19 +0.7
947,537 - Pf6N2E2_815 0.19 +0.7
947,668 - Pf6N2E2_815 0.22 +0.7
947,668 - Pf6N2E2_815 0.22 +0.7
947,689 + Pf6N2E2_815 0.23 -0.9
947,690 - Pf6N2E2_815 0.23 -1.3
947,716 + Pf6N2E2_815 0.24 -1.3
947,758 + Pf6N2E2_815 0.25 -0.3
947,758 + Pf6N2E2_815 0.25 +0.7
947,759 - Pf6N2E2_815 0.25 -0.9
947,759 - Pf6N2E2_815 0.25 -0.9
947,814 + Pf6N2E2_815 0.27 -0.3
947,815 - Pf6N2E2_815 0.27 +1.7
947,864 + Pf6N2E2_815 0.28 -0.3

Or see this region's nucleotide sequence