Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1415

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1412 and Pf6N2E2_1413 are separated by 53 nucleotidesPf6N2E2_1413 and Pf6N2E2_1414 are separated by 158 nucleotidesPf6N2E2_1414 and Pf6N2E2_1415 overlap by 18 nucleotidesPf6N2E2_1415 and Pf6N2E2_1416 are separated by 300 nucleotidesPf6N2E2_1416 and Pf6N2E2_1417 are separated by 90 nucleotidesPf6N2E2_1417 and Pf6N2E2_1418 are separated by 174 nucleotides Pf6N2E2_1412 - hypothetical protein, at 1,657,728 to 1,658,063 _1412 Pf6N2E2_1413 - putative membrane protein, at 1,658,117 to 1,658,560 _1413 Pf6N2E2_1414 - hypothetical protein, at 1,658,719 to 1,658,901 _1414 Pf6N2E2_1415 - mannuronan C-5-epimerase, putative, at 1,658,884 to 1,664,496 _1415 Pf6N2E2_1416 - Type I secretion outer membrane protein, TolC precursor, at 1,664,797 to 1,665,003 _1416 Pf6N2E2_1417 - Type I secretion outer membrane protein, TolC precursor, at 1,665,094 to 1,665,249 _1417 Pf6N2E2_1418 - Type I secretion outer membrane protein, TolC precursor, at 1,665,424 to 1,665,579 _1418 Position (kb) 1658 1659 1660 1661 1662 1663 1664 1665Strain fitness (log2 ratio) -2 -1 0 1 2at 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.941 kb on - strand, within Pf6N2E2_1412at 1658.130 kb on + strandat 1658.130 kb on + strandat 1658.130 kb on + strandat 1658.131 kb on - strandat 1658.131 kb on - strandat 1658.131 kb on - strandat 1658.131 kb on - strandat 1658.683 kb on - strandat 1658.817 kb on + strand, within Pf6N2E2_1414at 1658.995 kb on + strandat 1658.995 kb on + strandat 1658.995 kb on + strandat 1658.995 kb on + strandat 1658.995 kb on + strandat 1658.995 kb on + strandat 1658.995 kb on + strandat 1658.996 kb on - strandat 1658.996 kb on - strandat 1658.996 kb on - strandat 1658.996 kb on - strandat 1658.996 kb on - strandat 1659.014 kb on - strandat 1659.014 kb on - strandat 1659.073 kb on + strandat 1659.073 kb on + strandat 1659.161 kb on - strandat 1659.616 kb on + strand, within Pf6N2E2_1415at 1659.616 kb on + strand, within Pf6N2E2_1415at 1659.617 kb on - strand, within Pf6N2E2_1415at 1659.833 kb on - strand, within Pf6N2E2_1415at 1659.833 kb on - strand, within Pf6N2E2_1415at 1659.833 kb on - strand, within Pf6N2E2_1415at 1659.833 kb on - strand, within Pf6N2E2_1415at 1659.833 kb on - strand, within Pf6N2E2_1415at 1659.895 kb on + strand, within Pf6N2E2_1415at 1659.895 kb on + strand, within Pf6N2E2_1415at 1659.896 kb on - strand, within Pf6N2E2_1415at 1659.988 kb on + strand, within Pf6N2E2_1415at 1659.988 kb on + strand, within Pf6N2E2_1415at 1659.989 kb on - strandat 1660.003 kb on + strand, within Pf6N2E2_1415at 1660.003 kb on + strand, within Pf6N2E2_1415at 1660.003 kb on + strand, within Pf6N2E2_1415at 1660.004 kb on - strand, within Pf6N2E2_1415at 1660.004 kb on - strand, within Pf6N2E2_1415at 1660.004 kb on - strand, within Pf6N2E2_1415at 1660.110 kb on + strand, within Pf6N2E2_1415at 1660.375 kb on + strand, within Pf6N2E2_1415at 1660.375 kb on + strand, within Pf6N2E2_1415at 1660.375 kb on + strand, within Pf6N2E2_1415at 1660.376 kb on - strand, within Pf6N2E2_1415at 1660.376 kb on - strand, within Pf6N2E2_1415at 1660.376 kb on - strand, within Pf6N2E2_1415at 1660.388 kb on - strand, within Pf6N2E2_1415at 1660.681 kb on + strand, within Pf6N2E2_1415at 1660.682 kb on - strand, within Pf6N2E2_1415at 1660.801 kb on + strand, within Pf6N2E2_1415at 1660.802 kb on - strand, within Pf6N2E2_1415at 1660.802 kb on - strand, within Pf6N2E2_1415at 1660.834 kb on + strand, within Pf6N2E2_1415at 1660.834 kb on + strand, within Pf6N2E2_1415at 1660.835 kb on - strand, within Pf6N2E2_1415at 1660.835 kb on - strand, within Pf6N2E2_1415at 1660.835 kb on - strand, within Pf6N2E2_1415at 1660.835 kb on - strand, within Pf6N2E2_1415at 1660.835 kb on - strand, within Pf6N2E2_1415at 1660.835 kb on - strand, within Pf6N2E2_1415at 1660.897 kb on + strand, within Pf6N2E2_1415at 1660.898 kb on - strand, within Pf6N2E2_1415at 1660.898 kb on - strand, within Pf6N2E2_1415at 1660.898 kb on - strand, within Pf6N2E2_1415at 1661.173 kb on + strand, within Pf6N2E2_1415at 1661.174 kb on - strand, within Pf6N2E2_1415at 1661.174 kb on - strand, within Pf6N2E2_1415at 1661.174 kb on - strand, within Pf6N2E2_1415at 1661.229 kb on + strand, within Pf6N2E2_1415at 1661.230 kb on - strand, within Pf6N2E2_1415at 1661.435 kb on - strand, within Pf6N2E2_1415at 1661.539 kb on + strand, within Pf6N2E2_1415at 1661.540 kb on - strand, within Pf6N2E2_1415at 1661.540 kb on - strand, within Pf6N2E2_1415at 1661.540 kb on - strand, within Pf6N2E2_1415at 1661.542 kb on - strand, within Pf6N2E2_1415at 1661.584 kb on + strand, within Pf6N2E2_1415at 1661.584 kb on + strand, within Pf6N2E2_1415at 1661.584 kb on + strand, within Pf6N2E2_1415at 1661.585 kb on - strand, within Pf6N2E2_1415at 1661.608 kb on + strand, within Pf6N2E2_1415at 1661.609 kb on - strand, within Pf6N2E2_1415at 1661.845 kb on + strand, within Pf6N2E2_1415at 1661.846 kb on - strand, within Pf6N2E2_1415at 1661.846 kb on - strand, within Pf6N2E2_1415at 1661.951 kb on - strand, within Pf6N2E2_1415at 1661.951 kb on - strand, within Pf6N2E2_1415at 1661.951 kb on - strand, within Pf6N2E2_1415at 1661.957 kb on + strand, within Pf6N2E2_1415at 1661.957 kb on + strand, within Pf6N2E2_1415at 1661.957 kb on + strand, within Pf6N2E2_1415at 1661.958 kb on - strand, within Pf6N2E2_1415at 1662.117 kb on + strand, within Pf6N2E2_1415at 1662.118 kb on - strand, within Pf6N2E2_1415at 1662.239 kb on - strand, within Pf6N2E2_1415at 1662.358 kb on + strand, within Pf6N2E2_1415at 1662.358 kb on + strand, within Pf6N2E2_1415at 1662.358 kb on + strand, within Pf6N2E2_1415at 1662.358 kb on + strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.359 kb on - strand, within Pf6N2E2_1415at 1662.392 kb on - strand, within Pf6N2E2_1415at 1662.392 kb on - strand, within Pf6N2E2_1415at 1662.392 kb on - strand, within Pf6N2E2_1415at 1662.616 kb on + strand, within Pf6N2E2_1415at 1662.617 kb on - strand, within Pf6N2E2_1415at 1662.625 kb on + strand, within Pf6N2E2_1415at 1662.625 kb on + strand, within Pf6N2E2_1415at 1662.924 kb on + strand, within Pf6N2E2_1415at 1662.952 kb on + strand, within Pf6N2E2_1415at 1662.952 kb on + strand, within Pf6N2E2_1415at 1663.141 kb on + strand, within Pf6N2E2_1415at 1663.142 kb on - strand, within Pf6N2E2_1415at 1663.249 kb on + strand, within Pf6N2E2_1415at 1663.250 kb on - strand, within Pf6N2E2_1415at 1663.392 kb on + strand, within Pf6N2E2_1415at 1663.392 kb on + strand, within Pf6N2E2_1415at 1663.450 kb on + strand, within Pf6N2E2_1415at 1663.450 kb on + strand, within Pf6N2E2_1415at 1663.450 kb on + strand, within Pf6N2E2_1415at 1663.451 kb on - strand, within Pf6N2E2_1415at 1663.451 kb on - strand, within Pf6N2E2_1415at 1663.451 kb on - strand, within Pf6N2E2_1415at 1663.451 kb on - strand, within Pf6N2E2_1415at 1663.451 kb on - strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.699 kb on + strand, within Pf6N2E2_1415at 1663.700 kb on - strand, within Pf6N2E2_1415at 1663.700 kb on - strand, within Pf6N2E2_1415at 1663.700 kb on - strand, within Pf6N2E2_1415at 1663.700 kb on - strand, within Pf6N2E2_1415at 1663.792 kb on + strand, within Pf6N2E2_1415at 1663.792 kb on + strand, within Pf6N2E2_1415at 1663.792 kb on + strand, within Pf6N2E2_1415at 1663.792 kb on + strand, within Pf6N2E2_1415at 1663.794 kb on + strand, within Pf6N2E2_1415at 1663.794 kb on + strand, within Pf6N2E2_1415at 1663.795 kb on - strand, within Pf6N2E2_1415at 1663.795 kb on - strand, within Pf6N2E2_1415at 1663.795 kb on - strand, within Pf6N2E2_1415at 1663.822 kb on + strand, within Pf6N2E2_1415at 1663.823 kb on - strand, within Pf6N2E2_1415at 1663.872 kb on + strand, within Pf6N2E2_1415at 1663.873 kb on - strand, within Pf6N2E2_1415at 1663.873 kb on - strand, within Pf6N2E2_1415at 1664.197 kb on + strandat 1664.197 kb on + strandat 1664.197 kb on + strandat 1664.198 kb on - strandat 1664.471 kb on + strandat 1664.471 kb on + strandat 1664.472 kb on - strandat 1664.523 kb on + strandat 1664.523 kb on + strandat 1664.524 kb on - strandat 1664.527 kb on + strandat 1664.528 kb on - strandat 1664.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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1,657,935 - Pf6N2E2_1412 0.62 -0.4
1,657,935 - Pf6N2E2_1412 0.62 -0.2
1,657,935 - Pf6N2E2_1412 0.62 +0.5
1,657,935 - Pf6N2E2_1412 0.62 +0.1
1,657,941 - Pf6N2E2_1412 0.63 -2.2
1,658,130 + +1.0
1,658,130 + +0.5
1,658,130 + -0.1
1,658,131 - -0.5
1,658,131 - -0.4
1,658,131 - -0.4
1,658,131 - +0.6
1,658,683 - -0.2
1,658,817 + Pf6N2E2_1414 0.54 +0.6
1,658,995 + +1.2
1,658,995 + -0.2
1,658,995 + +1.6
1,658,995 + +0.6
1,658,995 + -0.1
1,658,995 + -0.0
1,658,995 + -1.0
1,658,996 - +0.2
1,658,996 - +0.2
1,658,996 - -1.4
1,658,996 - -1.7
1,658,996 - -1.0
1,659,014 - +0.6
1,659,014 - -0.4
1,659,073 + +0.6
1,659,073 + -2.4
1,659,161 - +0.6
1,659,616 + Pf6N2E2_1415 0.13 +0.0
1,659,616 + Pf6N2E2_1415 0.13 +1.2
1,659,617 - Pf6N2E2_1415 0.13 -1.0
1,659,833 - Pf6N2E2_1415 0.17 +0.2
1,659,833 - Pf6N2E2_1415 0.17 -0.9
1,659,833 - Pf6N2E2_1415 0.17 -1.4
1,659,833 - Pf6N2E2_1415 0.17 -0.1
1,659,833 - Pf6N2E2_1415 0.17 -0.0
1,659,895 + Pf6N2E2_1415 0.18 -0.2
1,659,895 + Pf6N2E2_1415 0.18 +0.9
1,659,896 - Pf6N2E2_1415 0.18 -0.0
1,659,988 + Pf6N2E2_1415 0.20 -1.4
1,659,988 + Pf6N2E2_1415 0.20 +0.6
1,659,989 - +0.6
1,660,003 + Pf6N2E2_1415 0.20 -0.9
1,660,003 + Pf6N2E2_1415 0.20 -1.0
1,660,003 + Pf6N2E2_1415 0.20 -1.4
1,660,004 - Pf6N2E2_1415 0.20 +0.4
1,660,004 - Pf6N2E2_1415 0.20 -0.3
1,660,004 - Pf6N2E2_1415 0.20 -1.5
1,660,110 + Pf6N2E2_1415 0.22 +0.6
1,660,375 + Pf6N2E2_1415 0.27 -1.4
1,660,375 + Pf6N2E2_1415 0.27 +0.6
1,660,375 + Pf6N2E2_1415 0.27 +2.0
1,660,376 - Pf6N2E2_1415 0.27 +0.6
1,660,376 - Pf6N2E2_1415 0.27 +1.4
1,660,376 - Pf6N2E2_1415 0.27 -1.2
1,660,388 - Pf6N2E2_1415 0.27 +0.0
1,660,681 + Pf6N2E2_1415 0.32 -0.4
1,660,682 - Pf6N2E2_1415 0.32 +0.3
1,660,801 + Pf6N2E2_1415 0.34 +0.6
1,660,802 - Pf6N2E2_1415 0.34 +0.2
1,660,802 - Pf6N2E2_1415 0.34 -1.4
1,660,834 + Pf6N2E2_1415 0.35 +0.6
1,660,834 + Pf6N2E2_1415 0.35 -0.4
1,660,835 - Pf6N2E2_1415 0.35 +0.1
1,660,835 - Pf6N2E2_1415 0.35 +0.6
1,660,835 - Pf6N2E2_1415 0.35 -0.6
1,660,835 - Pf6N2E2_1415 0.35 +0.6
1,660,835 - Pf6N2E2_1415 0.35 -0.5
1,660,835 - Pf6N2E2_1415 0.35 -0.4
1,660,897 + Pf6N2E2_1415 0.36 +1.4
1,660,898 - Pf6N2E2_1415 0.36 +0.4
1,660,898 - Pf6N2E2_1415 0.36 -0.4
1,660,898 - Pf6N2E2_1415 0.36 -0.5
1,661,173 + Pf6N2E2_1415 0.41 -0.8
1,661,174 - Pf6N2E2_1415 0.41 -0.2
1,661,174 - Pf6N2E2_1415 0.41 -1.2
1,661,174 - Pf6N2E2_1415 0.41 +0.8
1,661,229 + Pf6N2E2_1415 0.42 -1.7
1,661,230 - Pf6N2E2_1415 0.42 +0.0
1,661,435 - Pf6N2E2_1415 0.45 +0.6
1,661,539 + Pf6N2E2_1415 0.47 +0.6
1,661,540 - Pf6N2E2_1415 0.47 -0.1
1,661,540 - Pf6N2E2_1415 0.47 +0.2
1,661,540 - Pf6N2E2_1415 0.47 -1.0
1,661,542 - Pf6N2E2_1415 0.47 -1.7
1,661,584 + Pf6N2E2_1415 0.48 +0.3
1,661,584 + Pf6N2E2_1415 0.48 +0.6
1,661,584 + Pf6N2E2_1415 0.48 +0.6
1,661,585 - Pf6N2E2_1415 0.48 -0.4
1,661,608 + Pf6N2E2_1415 0.49 -0.4
1,661,609 - Pf6N2E2_1415 0.49 +1.0
1,661,845 + Pf6N2E2_1415 0.53 +0.6
1,661,846 - Pf6N2E2_1415 0.53 +0.0
1,661,846 - Pf6N2E2_1415 0.53 -0.0
1,661,951 - Pf6N2E2_1415 0.55 +1.4
1,661,951 - Pf6N2E2_1415 0.55 +0.3
1,661,951 - Pf6N2E2_1415 0.55 +0.4
1,661,957 + Pf6N2E2_1415 0.55 -0.4
1,661,957 + Pf6N2E2_1415 0.55 -0.6
1,661,957 + Pf6N2E2_1415 0.55 -0.4
1,661,958 - Pf6N2E2_1415 0.55 +0.2
1,662,117 + Pf6N2E2_1415 0.58 -0.8
1,662,118 - Pf6N2E2_1415 0.58 +0.1
1,662,239 - Pf6N2E2_1415 0.60 +0.4
1,662,358 + Pf6N2E2_1415 0.62 +0.3
1,662,358 + Pf6N2E2_1415 0.62 +0.6
1,662,358 + Pf6N2E2_1415 0.62 +0.8
1,662,358 + Pf6N2E2_1415 0.62 +0.4
1,662,359 - Pf6N2E2_1415 0.62 +1.4
1,662,359 - Pf6N2E2_1415 0.62 +0.3
1,662,359 - Pf6N2E2_1415 0.62 +1.1
1,662,359 - Pf6N2E2_1415 0.62 -0.4
1,662,359 - Pf6N2E2_1415 0.62 -0.5
1,662,359 - Pf6N2E2_1415 0.62 +0.6
1,662,359 - Pf6N2E2_1415 0.62 -1.4
1,662,359 - Pf6N2E2_1415 0.62 -1.0
1,662,392 - Pf6N2E2_1415 0.62 +0.6
1,662,392 - Pf6N2E2_1415 0.62 +0.0
1,662,392 - Pf6N2E2_1415 0.62 +0.1
1,662,616 + Pf6N2E2_1415 0.66 +0.6
1,662,617 - Pf6N2E2_1415 0.67 +0.4
1,662,625 + Pf6N2E2_1415 0.67 +0.3
1,662,625 + Pf6N2E2_1415 0.67 -0.3
1,662,924 + Pf6N2E2_1415 0.72 +0.3
1,662,952 + Pf6N2E2_1415 0.72 +0.4
1,662,952 + Pf6N2E2_1415 0.72 +1.4
1,663,141 + Pf6N2E2_1415 0.76 -1.0
1,663,142 - Pf6N2E2_1415 0.76 -1.0
1,663,249 + Pf6N2E2_1415 0.78 +0.6
1,663,250 - Pf6N2E2_1415 0.78 +1.0
1,663,392 + Pf6N2E2_1415 0.80 +1.4
1,663,392 + Pf6N2E2_1415 0.80 -1.0
1,663,450 + Pf6N2E2_1415 0.81 +1.1
1,663,450 + Pf6N2E2_1415 0.81 +0.6
1,663,450 + Pf6N2E2_1415 0.81 -0.4
1,663,451 - Pf6N2E2_1415 0.81 -1.2
1,663,451 - Pf6N2E2_1415 0.81 +0.0
1,663,451 - Pf6N2E2_1415 0.81 -2.2
1,663,451 - Pf6N2E2_1415 0.81 -1.7
1,663,451 - Pf6N2E2_1415 0.81 +0.7
1,663,699 + Pf6N2E2_1415 0.86 -1.0
1,663,699 + Pf6N2E2_1415 0.86 -0.0
1,663,699 + Pf6N2E2_1415 0.86 -1.0
1,663,699 + Pf6N2E2_1415 0.86 +0.6
1,663,699 + Pf6N2E2_1415 0.86 +0.1
1,663,699 + Pf6N2E2_1415 0.86 +1.6
1,663,699 + Pf6N2E2_1415 0.86 +0.3
1,663,699 + Pf6N2E2_1415 0.86 +1.2
1,663,700 - Pf6N2E2_1415 0.86 -1.4
1,663,700 - Pf6N2E2_1415 0.86 -0.4
1,663,700 - Pf6N2E2_1415 0.86 +1.6
1,663,700 - Pf6N2E2_1415 0.86 -1.0
1,663,792 + Pf6N2E2_1415 0.87 +0.6
1,663,792 + Pf6N2E2_1415 0.87 +0.6
1,663,792 + Pf6N2E2_1415 0.87 +0.6
1,663,792 + Pf6N2E2_1415 0.87 +0.6
1,663,794 + Pf6N2E2_1415 0.87 -0.4
1,663,794 + Pf6N2E2_1415 0.87 -1.0
1,663,795 - Pf6N2E2_1415 0.87 +0.6
1,663,795 - Pf6N2E2_1415 0.87 -1.4
1,663,795 - Pf6N2E2_1415 0.87 +0.3
1,663,822 + Pf6N2E2_1415 0.88 -0.4
1,663,823 - Pf6N2E2_1415 0.88 +0.8
1,663,872 + Pf6N2E2_1415 0.89 +0.6
1,663,873 - Pf6N2E2_1415 0.89 -0.1
1,663,873 - Pf6N2E2_1415 0.89 +0.8
1,664,197 + +0.7
1,664,197 + +0.6
1,664,197 + +0.6
1,664,198 - -0.7
1,664,471 + +0.1
1,664,471 + -0.9
1,664,472 - -0.9
1,664,523 + +0.7
1,664,523 + +0.6
1,664,524 - +0.6
1,664,527 + +0.6
1,664,528 - -0.1
1,664,999 - -0.3

Or see this region's nucleotide sequence