Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1579

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1578 and Pf6N2E2_1579 are separated by 465 nucleotidesPf6N2E2_1579 and Pf6N2E2_1580 are separated by 84 nucleotides Pf6N2E2_1578 - T1SS secreted agglutinin RTX, at 1,843,752 to 1,847,927 _1578 Pf6N2E2_1579 - hypothetical protein, at 1,848,393 to 1,848,752 _1579 Pf6N2E2_1580 - putative two-component system response regulator, at 1,848,837 to 1,849,454 _1580 Position (kb) 1848 1849Strain fitness (log2 ratio) -2 -1 0 1at 1847.724 kb on + strandat 1847.747 kb on - strandat 1847.873 kb on + strandat 1847.873 kb on + strandat 1847.873 kb on + strandat 1847.873 kb on + strandat 1847.873 kb on + strandat 1847.874 kb on - strandat 1847.988 kb on + strandat 1848.057 kb on - strandat 1848.089 kb on - strandat 1848.089 kb on - strandat 1848.110 kb on + strandat 1848.110 kb on + strandat 1848.110 kb on + strandat 1848.116 kb on + strandat 1848.117 kb on - strandat 1848.117 kb on - strandat 1848.117 kb on - strandat 1848.158 kb on + strandat 1848.212 kb on - strandat 1848.219 kb on + strandat 1848.219 kb on + strandat 1848.219 kb on + strandat 1848.220 kb on - strandat 1848.220 kb on - strandat 1848.220 kb on - strandat 1848.256 kb on + strandat 1848.256 kb on + strandat 1848.257 kb on - strandat 1848.257 kb on - strandat 1848.272 kb on + strandat 1848.272 kb on + strandat 1848.272 kb on + strandat 1848.273 kb on - strandat 1848.273 kb on - strandat 1848.273 kb on - strandat 1848.273 kb on - strandat 1848.273 kb on - strandat 1848.273 kb on - strandat 1848.273 kb on - strandat 1848.276 kb on + strandat 1848.276 kb on + strandat 1848.277 kb on - strandat 1848.277 kb on - strandat 1848.277 kb on - strandat 1848.304 kb on + strandat 1848.304 kb on + strandat 1848.304 kb on + strandat 1848.304 kb on + strandat 1848.305 kb on - strandat 1848.305 kb on - strandat 1848.380 kb on + strandat 1848.381 kb on - strandat 1848.441 kb on + strand, within Pf6N2E2_1579at 1848.441 kb on + strand, within Pf6N2E2_1579at 1848.441 kb on + strand, within Pf6N2E2_1579at 1848.441 kb on + strand, within Pf6N2E2_1579at 1848.495 kb on + strand, within Pf6N2E2_1579at 1848.499 kb on - strand, within Pf6N2E2_1579at 1848.499 kb on - strand, within Pf6N2E2_1579at 1848.499 kb on - strand, within Pf6N2E2_1579at 1848.791 kb on - strandat 1848.791 kb on - strandat 1848.804 kb on - strandat 1848.904 kb on + strand, within Pf6N2E2_1580at 1848.904 kb on + strand, within Pf6N2E2_1580at 1848.904 kb on + strand, within Pf6N2E2_1580at 1848.905 kb on - strand, within Pf6N2E2_1580at 1848.905 kb on - strand, within Pf6N2E2_1580at 1848.905 kb on - strand, within Pf6N2E2_1580at 1848.905 kb on - strand, within Pf6N2E2_1580at 1848.905 kb on - strand, within Pf6N2E2_1580at 1848.905 kb on - strand, within Pf6N2E2_1580at 1848.946 kb on + strand, within Pf6N2E2_1580at 1848.946 kb on + strandat 1848.947 kb on - strand, within Pf6N2E2_1580at 1848.953 kb on + strand, within Pf6N2E2_1580at 1848.954 kb on - strand, within Pf6N2E2_1580at 1848.954 kb on - strand, within Pf6N2E2_1580at 1849.012 kb on + strand, within Pf6N2E2_1580at 1849.012 kb on + strand, within Pf6N2E2_1580at 1849.012 kb on + strand, within Pf6N2E2_1580at 1849.013 kb on - strand, within Pf6N2E2_1580at 1849.013 kb on - strand, within Pf6N2E2_1580at 1849.282 kb on + strand, within Pf6N2E2_1580at 1849.424 kb on + strandat 1849.426 kb on + strandat 1849.426 kb on + strandat 1849.426 kb on + strandat 1849.541 kb on + strandat 1849.541 kb on + strandat 1849.682 kb on - strandat 1849.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,847,724 + +0.0
1,847,747 - +0.5
1,847,873 + -0.8
1,847,873 + +0.5
1,847,873 + +1.2
1,847,873 + -0.4
1,847,873 + +0.5
1,847,874 - -0.5
1,847,988 + -0.0
1,848,057 - +0.2
1,848,089 - +0.4
1,848,089 - +1.2
1,848,110 + -0.3
1,848,110 + +0.1
1,848,110 + +0.5
1,848,116 + -0.2
1,848,117 - -1.8
1,848,117 - +0.5
1,848,117 - +0.5
1,848,158 + +0.5
1,848,212 - +0.8
1,848,219 + -1.1
1,848,219 + -0.5
1,848,219 + +1.0
1,848,220 - +0.5
1,848,220 - -1.1
1,848,220 - -0.4
1,848,256 + +0.5
1,848,256 + +0.5
1,848,257 - +0.5
1,848,257 - -0.5
1,848,272 + +0.3
1,848,272 + -1.1
1,848,272 + -0.1
1,848,273 - -0.5
1,848,273 - +0.4
1,848,273 - +0.1
1,848,273 - +0.5
1,848,273 - +0.4
1,848,273 - -0.1
1,848,273 - -0.5
1,848,276 + +0.5
1,848,276 + -0.5
1,848,277 - +0.9
1,848,277 - -0.8
1,848,277 - -2.5
1,848,304 + +0.5
1,848,304 + -0.3
1,848,304 + +0.5
1,848,304 + -0.3
1,848,305 - +1.2
1,848,305 - +1.3
1,848,380 + +0.1
1,848,381 - -0.5
1,848,441 + Pf6N2E2_1579 0.13 -0.3
1,848,441 + Pf6N2E2_1579 0.13 -1.1
1,848,441 + Pf6N2E2_1579 0.13 -0.1
1,848,441 + Pf6N2E2_1579 0.13 -1.2
1,848,495 + Pf6N2E2_1579 0.28 +0.5
1,848,499 - Pf6N2E2_1579 0.29 -1.1
1,848,499 - Pf6N2E2_1579 0.29 -1.5
1,848,499 - Pf6N2E2_1579 0.29 -1.8
1,848,791 - +0.5
1,848,791 - -0.1
1,848,804 - -0.2
1,848,904 + Pf6N2E2_1580 0.11 -2.1
1,848,904 + Pf6N2E2_1580 0.11 -2.1
1,848,904 + Pf6N2E2_1580 0.11 +0.6
1,848,905 - Pf6N2E2_1580 0.11 -1.1
1,848,905 - Pf6N2E2_1580 0.11 +0.5
1,848,905 - Pf6N2E2_1580 0.11 +0.1
1,848,905 - Pf6N2E2_1580 0.11 -0.4
1,848,905 - Pf6N2E2_1580 0.11 -0.8
1,848,905 - Pf6N2E2_1580 0.11 -0.1
1,848,946 + Pf6N2E2_1580 0.18 +0.5
1,848,946 + +0.5
1,848,947 - Pf6N2E2_1580 0.18 -1.1
1,848,953 + Pf6N2E2_1580 0.19 -0.5
1,848,954 - Pf6N2E2_1580 0.19 +0.5
1,848,954 - Pf6N2E2_1580 0.19 -0.7
1,849,012 + Pf6N2E2_1580 0.28 -1.1
1,849,012 + Pf6N2E2_1580 0.28 +0.5
1,849,012 + Pf6N2E2_1580 0.28 +0.5
1,849,013 - Pf6N2E2_1580 0.28 -0.2
1,849,013 - Pf6N2E2_1580 0.28 +0.2
1,849,282 + Pf6N2E2_1580 0.72 +0.5
1,849,424 + -1.6
1,849,426 + +0.5
1,849,426 + -0.0
1,849,426 + +0.5
1,849,541 + +0.8
1,849,541 + +0.1
1,849,682 - +0.5
1,849,691 - -0.5

Or see this region's nucleotide sequence