Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17605 and BWI76_RS17610 are separated by 314 nucleotides BWI76_RS17610 and BWI76_RS17615 are separated by 59 nucleotides BWI76_RS17615 and BWI76_RS17620 are separated by 179 nucleotides
BWI76_RS17605: BWI76_RS17605 - phosphoenolpyruvate carboxykinase (ATP), at 3,656,764 to 3,658,404
_RS17605
BWI76_RS17610: BWI76_RS17610 - LysR family transcriptional regulator, at 3,658,719 to 3,659,612
_RS17610
BWI76_RS17615: BWI76_RS17615 - RNA pseudouridine synthase, at 3,659,672 to 3,660,358
_RS17615
BWI76_RS17620: BWI76_RS17620 - ABC transporter ATP-binding protein, at 3,660,538 to 3,661,626
_RS17620
Position (kb)
3658
3659
3660 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3657.733 kb on - strand, within BWI76_RS17605 at 3657.825 kb on + strand, within BWI76_RS17605 at 3657.834 kb on - strand, within BWI76_RS17605 at 3657.848 kb on + strand, within BWI76_RS17605 at 3657.856 kb on + strand, within BWI76_RS17605 at 3657.856 kb on + strand, within BWI76_RS17605 at 3657.856 kb on - strand, within BWI76_RS17605 at 3657.880 kb on + strand, within BWI76_RS17605 at 3657.893 kb on + strand, within BWI76_RS17605 at 3657.895 kb on + strand, within BWI76_RS17605 at 3657.903 kb on - strand, within BWI76_RS17605 at 3658.071 kb on + strand, within BWI76_RS17605 at 3658.180 kb on - strand, within BWI76_RS17605 at 3658.180 kb on - strand, within BWI76_RS17605 at 3658.233 kb on - strand, within BWI76_RS17605 at 3658.248 kb on + strand at 3658.252 kb on + strand at 3658.290 kb on - strand at 3658.295 kb on - strand at 3658.295 kb on - strand at 3658.318 kb on + strand at 3658.349 kb on - strand at 3658.351 kb on + strand at 3658.353 kb on + strand at 3658.353 kb on + strand at 3658.353 kb on + strand at 3658.353 kb on + strand at 3658.356 kb on - strand at 3658.356 kb on - strand at 3658.359 kb on - strand at 3658.359 kb on - strand at 3658.359 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.361 kb on - strand at 3658.396 kb on - strand at 3658.409 kb on - strand at 3658.419 kb on + strand at 3658.520 kb on + strand at 3658.525 kb on + strand at 3658.525 kb on + strand at 3658.525 kb on + strand at 3658.528 kb on - strand at 3658.528 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.533 kb on - strand at 3658.554 kb on + strand at 3658.554 kb on + strand at 3658.554 kb on + strand at 3658.560 kb on + strand at 3658.562 kb on - strand at 3658.562 kb on - strand at 3658.562 kb on - strand at 3658.566 kb on + strand at 3658.569 kb on - strand at 3658.569 kb on - strand at 3658.573 kb on + strand at 3658.573 kb on + strand at 3658.574 kb on - strand at 3658.581 kb on - strand at 3658.589 kb on - strand at 3658.589 kb on - strand at 3658.589 kb on - strand at 3658.601 kb on + strand at 3658.607 kb on + strand at 3658.607 kb on + strand at 3658.615 kb on - strand at 3658.641 kb on - strand at 3658.641 kb on - strand at 3658.660 kb on + strand at 3658.668 kb on + strand at 3658.668 kb on - strand at 3658.703 kb on + strand at 3658.709 kb on - strand at 3658.714 kb on + strand at 3658.753 kb on + strand at 3658.755 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.762 kb on + strand at 3658.770 kb on - strand at 3658.770 kb on - strand at 3658.770 kb on - strand at 3658.770 kb on - strand at 3658.770 kb on - strand at 3658.772 kb on + strand at 3658.772 kb on + strand at 3658.772 kb on + strand at 3658.772 kb on + strand at 3658.780 kb on + strand at 3658.780 kb on + strand at 3658.788 kb on - strand at 3658.845 kb on + strand, within BWI76_RS17610 at 3658.845 kb on + strand, within BWI76_RS17610 at 3658.845 kb on + strand, within BWI76_RS17610 at 3658.869 kb on + strand, within BWI76_RS17610 at 3658.874 kb on + strand, within BWI76_RS17610 at 3658.958 kb on - strand, within BWI76_RS17610 at 3659.102 kb on + strand, within BWI76_RS17610 at 3659.108 kb on + strand, within BWI76_RS17610 at 3659.118 kb on + strand, within BWI76_RS17610 at 3659.130 kb on - strand, within BWI76_RS17610 at 3659.167 kb on + strand, within BWI76_RS17610 at 3659.183 kb on + strand, within BWI76_RS17610 at 3659.215 kb on + strand at 3659.220 kb on + strand, within BWI76_RS17610 at 3659.247 kb on + strand, within BWI76_RS17610 at 3659.255 kb on - strand, within BWI76_RS17610 at 3659.255 kb on - strand, within BWI76_RS17610 at 3659.257 kb on - strand, within BWI76_RS17610 at 3659.283 kb on + strand, within BWI76_RS17610 at 3659.314 kb on + strand, within BWI76_RS17610 at 3659.323 kb on - strand, within BWI76_RS17610 at 3659.339 kb on + strand, within BWI76_RS17610 at 3659.340 kb on + strand, within BWI76_RS17610 at 3659.348 kb on - strand, within BWI76_RS17610 at 3659.370 kb on + strand, within BWI76_RS17610 at 3659.385 kb on - strand, within BWI76_RS17610 at 3659.675 kb on - strand at 3659.733 kb on + strand at 3659.938 kb on + strand, within BWI76_RS17615 at 3660.052 kb on + strand, within BWI76_RS17615 at 3660.222 kb on + strand, within BWI76_RS17615 at 3660.298 kb on + strand at 3660.360 kb on - strand at 3660.387 kb on + strand at 3660.476 kb on + strand at 3660.476 kb on + strand at 3660.476 kb on + strand at 3660.477 kb on + strand at 3660.484 kb on + strand at 3660.485 kb on + strand at 3660.490 kb on + strand at 3660.490 kb on + strand at 3660.495 kb on + strand at 3660.501 kb on - strand at 3660.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 3,657,733 - BWI76_RS17605 0.59 -0.2 3,657,825 + BWI76_RS17605 0.65 +0.3 3,657,834 - BWI76_RS17605 0.65 +0.6 3,657,848 + BWI76_RS17605 0.66 -0.5 3,657,856 + BWI76_RS17605 0.67 +0.1 3,657,856 + BWI76_RS17605 0.67 -0.3 3,657,856 - BWI76_RS17605 0.67 -1.2 3,657,880 + BWI76_RS17605 0.68 -0.1 3,657,893 + BWI76_RS17605 0.69 +0.1 3,657,895 + BWI76_RS17605 0.69 -0.5 3,657,903 - BWI76_RS17605 0.69 -0.6 3,658,071 + BWI76_RS17605 0.80 +0.3 3,658,180 - BWI76_RS17605 0.86 +0.5 3,658,180 - BWI76_RS17605 0.86 -0.1 3,658,233 - BWI76_RS17605 0.90 -0.2 3,658,248 + -0.2 3,658,252 + +0.3 3,658,290 - -0.4 3,658,295 - +1.1 3,658,295 - +0.2 3,658,318 + +0.2 3,658,349 - -0.4 3,658,351 + -0.8 3,658,353 + +1.4 3,658,353 + -0.1 3,658,353 + +0.1 3,658,353 + +0.4 3,658,356 - +0.8 3,658,356 - -0.5 3,658,359 - +0.1 3,658,359 - -0.2 3,658,359 - +0.4 3,658,361 - -0.4 3,658,361 - -1.7 3,658,361 - -0.1 3,658,361 - -1.5 3,658,361 - -0.1 3,658,361 - +0.1 3,658,361 - -0.7 3,658,361 - +0.7 3,658,361 - +0.2 3,658,361 - +1.0 3,658,361 - +1.1 3,658,361 - -0.6 3,658,361 - -0.1 3,658,361 - -0.3 3,658,361 - -0.7 3,658,361 - +1.8 3,658,361 - -0.7 3,658,361 - -0.5 3,658,361 - +1.3 3,658,361 - +0.3 3,658,361 - +0.7 3,658,361 - +0.6 3,658,361 - +0.1 3,658,361 - +0.2 3,658,361 - -1.4 3,658,361 - +0.0 3,658,361 - -0.1 3,658,361 - +0.0 3,658,361 - +1.0 3,658,396 - -0.6 3,658,409 - +0.6 3,658,419 + -1.7 3,658,520 + +0.8 3,658,525 + -0.9 3,658,525 + -1.2 3,658,525 + +0.3 3,658,528 - -0.7 3,658,528 - +1.1 3,658,533 - -0.1 3,658,533 - +0.0 3,658,533 - +1.3 3,658,533 - +0.6 3,658,533 - -1.4 3,658,533 - -1.7 3,658,533 - +1.0 3,658,533 - +1.0 3,658,533 - +0.3 3,658,533 - +0.1 3,658,554 + -0.1 3,658,554 + +0.8 3,658,554 + -0.3 3,658,560 + -0.9 3,658,562 - -0.6 3,658,562 - +0.6 3,658,562 - -0.2 3,658,566 + -0.0 3,658,569 - -0.1 3,658,569 - -0.3 3,658,573 + -0.4 3,658,573 + +1.3 3,658,574 - +0.6 3,658,581 - -0.6 3,658,589 - -0.0 3,658,589 - +0.4 3,658,589 - -0.8 3,658,601 + +1.7 3,658,607 + +0.1 3,658,607 + +0.2 3,658,615 - +0.3 3,658,641 - +0.4 3,658,641 - +0.3 3,658,660 + -0.2 3,658,668 + +2.7 3,658,668 - +0.3 3,658,703 + +0.1 3,658,709 - +0.6 3,658,714 + -0.2 3,658,753 + -1.1 3,658,755 + +1.0 3,658,762 + +0.6 3,658,762 + +1.3 3,658,762 + -0.1 3,658,762 + -0.6 3,658,762 + +0.7 3,658,762 + +0.7 3,658,762 + +0.8 3,658,762 + -0.4 3,658,762 + +0.3 3,658,762 + -0.6 3,658,762 + +0.0 3,658,762 + -0.5 3,658,762 + +0.1 3,658,762 + +0.4 3,658,762 + +0.0 3,658,762 + -1.6 3,658,762 + -0.4 3,658,762 + +0.3 3,658,770 - +1.4 3,658,770 - +1.3 3,658,770 - -0.7 3,658,770 - +0.3 3,658,770 - +0.1 3,658,772 + +0.6 3,658,772 + -0.1 3,658,772 + +1.1 3,658,772 + +1.0 3,658,780 + -0.3 3,658,780 + -0.8 3,658,788 - -0.9 3,658,845 + BWI76_RS17610 0.14 +0.4 3,658,845 + BWI76_RS17610 0.14 +0.6 3,658,845 + BWI76_RS17610 0.14 +1.1 3,658,869 + BWI76_RS17610 0.17 +0.1 3,658,874 + BWI76_RS17610 0.17 -0.2 3,658,958 - BWI76_RS17610 0.27 -0.2 3,659,102 + BWI76_RS17610 0.43 -0.1 3,659,108 + BWI76_RS17610 0.44 +0.4 3,659,118 + BWI76_RS17610 0.45 +0.6 3,659,130 - BWI76_RS17610 0.46 -0.2 3,659,167 + BWI76_RS17610 0.50 -1.1 3,659,183 + BWI76_RS17610 0.52 +1.9 3,659,215 + +0.8 3,659,220 + BWI76_RS17610 0.56 -0.6 3,659,247 + BWI76_RS17610 0.59 -2.3 3,659,255 - BWI76_RS17610 0.60 -0.1 3,659,255 - BWI76_RS17610 0.60 -1.7 3,659,257 - BWI76_RS17610 0.60 -1.8 3,659,283 + BWI76_RS17610 0.63 -0.3 3,659,314 + BWI76_RS17610 0.67 +0.4 3,659,323 - BWI76_RS17610 0.68 +0.1 3,659,339 + BWI76_RS17610 0.69 -0.0 3,659,340 + BWI76_RS17610 0.69 -0.2 3,659,348 - BWI76_RS17610 0.70 -0.3 3,659,370 + BWI76_RS17610 0.73 +0.2 3,659,385 - BWI76_RS17610 0.74 -0.2 3,659,675 - +0.3 3,659,733 + -0.6 3,659,938 + BWI76_RS17615 0.39 -0.0 3,660,052 + BWI76_RS17615 0.55 -2.8 3,660,222 + BWI76_RS17615 0.80 -2.5 3,660,298 + -0.2 3,660,360 - +0.0 3,660,387 + -0.2 3,660,476 + -0.4 3,660,476 + -0.3 3,660,476 + +0.9 3,660,477 + -0.4 3,660,484 + +0.4 3,660,485 + +0.0 3,660,490 + +0.6 3,660,490 + +0.9 3,660,495 + +0.7 3,660,501 - +0.5 3,660,607 - -0.3
Or see this region's nucleotide sequence