Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11960

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11950 and BWI76_RS11955 are separated by 135 nucleotidesBWI76_RS11955 and BWI76_RS11960 are separated by 6 nucleotidesBWI76_RS11960 and BWI76_RS11965 are separated by 191 nucleotidesBWI76_RS11965 and BWI76_RS11970 overlap by 1 nucleotides BWI76_RS11950: BWI76_RS11950 - phosphatidylglycerophosphatase B, at 2,516,820 to 2,517,587 _RS11950 BWI76_RS11955: BWI76_RS11955 - hypothetical protein, at 2,517,723 to 2,518,031 _RS11955 BWI76_RS11960: BWI76_RS11960 - lipopolysaccharide assembly protein LapB, at 2,518,038 to 2,519,207 _RS11960 BWI76_RS11965: BWI76_RS11965 - orotidine-5'-phosphate decarboxylase, at 2,519,399 to 2,520,136 _RS11965 BWI76_RS11970: BWI76_RS11970 - stress response translation initiation inhibitor YciH, at 2,520,136 to 2,520,462 _RS11970 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2517.084 kb on + strand, within BWI76_RS11950at 2517.098 kb on - strand, within BWI76_RS11950at 2517.339 kb on + strand, within BWI76_RS11950at 2517.340 kb on + strand, within BWI76_RS11950at 2517.345 kb on + strand, within BWI76_RS11950at 2517.523 kb on - strandat 2517.610 kb on - strandat 2517.649 kb on - strandat 2519.432 kb on + strandat 2519.456 kb on + strandat 2519.791 kb on - strand, within BWI76_RS11965at 2519.933 kb on + strand, within BWI76_RS11965at 2519.960 kb on - strand, within BWI76_RS11965at 2520.053 kb on + strand, within BWI76_RS11965

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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2,517,084 + BWI76_RS11950 0.34 +0.3
2,517,098 - BWI76_RS11950 0.36 -0.2
2,517,339 + BWI76_RS11950 0.68 +0.1
2,517,340 + BWI76_RS11950 0.68 -1.8
2,517,345 + BWI76_RS11950 0.68 +0.4
2,517,523 - +0.6
2,517,610 - +0.5
2,517,649 - -0.2
2,519,432 + -2.8
2,519,456 + -3.6
2,519,791 - BWI76_RS11965 0.53 -4.7
2,519,933 + BWI76_RS11965 0.72 -4.6
2,519,960 - BWI76_RS11965 0.76 -5.1
2,520,053 + BWI76_RS11965 0.89 -3.5

Or see this region's nucleotide sequence