Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04830 and BWI76_RS04835 overlap by 11 nucleotides BWI76_RS04835 and BWI76_RS04840 are separated by 10 nucleotides BWI76_RS04840 and BWI76_RS04845 are separated by 183 nucleotides
BWI76_RS04830: BWI76_RS04830 - type IV pilin biogenesis protein, at 1,008,810 to 1,010,015
_RS04830
BWI76_RS04835: BWI76_RS04835 - type II secretion system protein GspE, at 1,010,005 to 1,011,390
_RS04835
BWI76_RS04840: BWI76_RS04840 - prepilin peptidase-dependent pilin, at 1,011,401 to 1,011,832
_RS04840
BWI76_RS04845: BWI76_RS04845 - nicotinate-nucleotide pyrophosphorylase, at 1,012,016 to 1,012,909
_RS04845
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1009.028 kb on + strand, within BWI76_RS04830 at 1009.028 kb on + strand, within BWI76_RS04830 at 1009.267 kb on + strand, within BWI76_RS04830 at 1009.418 kb on + strand, within BWI76_RS04830 at 1009.480 kb on + strand, within BWI76_RS04830 at 1009.486 kb on + strand, within BWI76_RS04830 at 1009.562 kb on - strand, within BWI76_RS04830 at 1009.712 kb on + strand, within BWI76_RS04830 at 1009.714 kb on + strand, within BWI76_RS04830 at 1009.777 kb on + strand, within BWI76_RS04830 at 1009.868 kb on - strand, within BWI76_RS04830 at 1010.247 kb on - strand, within BWI76_RS04835 at 1010.279 kb on - strand, within BWI76_RS04835 at 1010.289 kb on - strand, within BWI76_RS04835 at 1010.591 kb on + strand, within BWI76_RS04835 at 1010.797 kb on - strand, within BWI76_RS04835 at 1010.836 kb on - strand, within BWI76_RS04835 at 1011.154 kb on + strand, within BWI76_RS04835 at 1011.270 kb on + strand at 1011.506 kb on - strand, within BWI76_RS04840 at 1011.553 kb on + strand, within BWI76_RS04840 at 1011.670 kb on + strand, within BWI76_RS04840 at 1011.698 kb on + strand, within BWI76_RS04840 at 1011.706 kb on - strand, within BWI76_RS04840 at 1011.808 kb on + strand at 1011.808 kb on + strand at 1012.036 kb on + strand at 1012.100 kb on - strand at 1012.194 kb on - strand, within BWI76_RS04845
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 1,009,028 + BWI76_RS04830 0.18 +0.2 1,009,028 + BWI76_RS04830 0.18 -0.8 1,009,267 + BWI76_RS04830 0.38 -0.3 1,009,418 + BWI76_RS04830 0.50 +1.1 1,009,480 + BWI76_RS04830 0.56 -0.3 1,009,486 + BWI76_RS04830 0.56 +1.5 1,009,562 - BWI76_RS04830 0.62 +0.0 1,009,712 + BWI76_RS04830 0.75 -0.6 1,009,714 + BWI76_RS04830 0.75 -0.4 1,009,777 + BWI76_RS04830 0.80 -0.6 1,009,868 - BWI76_RS04830 0.88 -0.6 1,010,247 - BWI76_RS04835 0.17 -1.0 1,010,279 - BWI76_RS04835 0.20 -7.3 1,010,289 - BWI76_RS04835 0.20 +0.0 1,010,591 + BWI76_RS04835 0.42 +1.2 1,010,797 - BWI76_RS04835 0.57 -0.7 1,010,836 - BWI76_RS04835 0.60 -1.2 1,011,154 + BWI76_RS04835 0.83 -0.3 1,011,270 + -0.7 1,011,506 - BWI76_RS04840 0.24 +0.0 1,011,553 + BWI76_RS04840 0.35 +0.2 1,011,670 + BWI76_RS04840 0.62 +0.2 1,011,698 + BWI76_RS04840 0.69 +0.7 1,011,706 - BWI76_RS04840 0.71 -0.4 1,011,808 + -1.5 1,011,808 + +0.2 1,012,036 + -4.0 1,012,100 - -3.7 1,012,194 - BWI76_RS04845 0.20 -3.9
Or see this region's nucleotide sequence