Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6174 and Pf6N2E2_6175 are separated by 166 nucleotides Pf6N2E2_6175 and Pf6N2E2_6084 are separated by 115 nucleotides Pf6N2E2_6084 and Pf6N2E2_6085 are separated by 142 nucleotides
Pf6N2E2_6174 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 6,905,531 to 6,908,422
_6174
Pf6N2E2_6175 - 5S RNA, at 6,908,589 to 6,908,708
_6175
Pf6N2E2_6084 - FIG00638667: hypothetical protein, at 6,908,824 to 6,909,225
_6084
Pf6N2E2_6085 - Aha1 domain superfamily, at 6,909,368 to 6,909,826
_6085
Position (kb)
6908
6909 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6908.796 kb on - strand at 6908.874 kb on - strand, within Pf6N2E2_6084 at 6908.874 kb on - strand, within Pf6N2E2_6084 at 6908.901 kb on + strand, within Pf6N2E2_6084 at 6908.901 kb on + strand, within Pf6N2E2_6084 at 6908.927 kb on + strand, within Pf6N2E2_6084 at 6908.927 kb on + strand, within Pf6N2E2_6084 at 6909.074 kb on + strand, within Pf6N2E2_6084 at 6909.074 kb on + strand, within Pf6N2E2_6084 at 6909.074 kb on + strand, within Pf6N2E2_6084 at 6909.074 kb on + strand, within Pf6N2E2_6084 at 6909.180 kb on + strand, within Pf6N2E2_6084 at 6909.268 kb on + strand at 6909.269 kb on - strand at 6909.269 kb on - strand at 6909.306 kb on + strand at 6909.307 kb on - strand at 6909.307 kb on - strand at 6909.334 kb on + strand at 6909.334 kb on + strand at 6909.334 kb on + strand at 6909.334 kb on + strand at 6909.334 kb on + strand at 6909.334 kb on + strand at 6909.335 kb on - strand at 6909.343 kb on - strand at 6909.343 kb on - strand at 6909.531 kb on - strand, within Pf6N2E2_6085 at 6909.531 kb on - strand, within Pf6N2E2_6085 at 6909.615 kb on - strand, within Pf6N2E2_6085
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 6,908,796 - +0.5 6,908,874 - Pf6N2E2_6084 0.12 +1.5 6,908,874 - Pf6N2E2_6084 0.12 -0.5 6,908,901 + Pf6N2E2_6084 0.19 -0.9 6,908,901 + Pf6N2E2_6084 0.19 -0.1 6,908,927 + Pf6N2E2_6084 0.26 -1.3 6,908,927 + Pf6N2E2_6084 0.26 -0.2 6,909,074 + Pf6N2E2_6084 0.62 -1.5 6,909,074 + Pf6N2E2_6084 0.62 +0.5 6,909,074 + Pf6N2E2_6084 0.62 -2.1 6,909,074 + Pf6N2E2_6084 0.62 -0.5 6,909,180 + Pf6N2E2_6084 0.89 +0.5 6,909,268 + +0.8 6,909,269 - -0.1 6,909,269 - -0.5 6,909,306 + -0.1 6,909,307 - -0.5 6,909,307 - +1.1 6,909,334 + +0.1 6,909,334 + -0.1 6,909,334 + +0.2 6,909,334 + -0.4 6,909,334 + +0.8 6,909,334 + +0.2 6,909,335 - -0.1 6,909,343 - -0.2 6,909,343 - +1.8 6,909,531 - Pf6N2E2_6085 0.36 +1.5 6,909,531 - Pf6N2E2_6085 0.36 +1.5 6,909,615 - Pf6N2E2_6085 0.54 +1.1
Or see this region's nucleotide sequence