Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4334

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4332 and Pf6N2E2_4333 are separated by 81 nucleotidesPf6N2E2_4333 and Pf6N2E2_4334 are separated by 220 nucleotidesPf6N2E2_4334 and Pf6N2E2_4335 overlap by 4 nucleotidesPf6N2E2_4335 and Pf6N2E2_4336 are separated by 81 nucleotides Pf6N2E2_4332 - hypothetical protein, at 5,054,927 to 5,055,382 _4332 Pf6N2E2_4333 - Uncharacterized protein ImpD, at 5,055,464 to 5,055,952 _4333 Pf6N2E2_4334 - Uncharacterized protein ImpC, at 5,056,173 to 5,057,675 _4334 Pf6N2E2_4335 - Uncharacterized protein ImpB, at 5,057,672 to 5,058,178 _4335 Pf6N2E2_4336 - Uncharacterized protein ImpA, at 5,058,260 to 5,059,303 _4336 Position (kb) 5056 5057 5058Strain fitness (log2 ratio) -2 -1 0 1 2at 5055.219 kb on + strand, within Pf6N2E2_4332at 5055.219 kb on + strand, within Pf6N2E2_4332at 5055.220 kb on - strand, within Pf6N2E2_4332at 5055.220 kb on - strand, within Pf6N2E2_4332at 5055.253 kb on + strand, within Pf6N2E2_4332at 5055.253 kb on + strand, within Pf6N2E2_4332at 5055.254 kb on - strand, within Pf6N2E2_4332at 5055.325 kb on - strand, within Pf6N2E2_4332at 5055.345 kb on + strandat 5055.345 kb on + strandat 5055.345 kb on + strandat 5055.345 kb on + strandat 5055.346 kb on - strandat 5055.391 kb on + strandat 5055.391 kb on + strandat 5055.391 kb on + strandat 5055.392 kb on - strandat 5055.392 kb on - strandat 5055.465 kb on + strandat 5055.465 kb on + strandat 5055.466 kb on - strandat 5055.631 kb on + strand, within Pf6N2E2_4333at 5055.631 kb on + strand, within Pf6N2E2_4333at 5055.632 kb on - strand, within Pf6N2E2_4333at 5055.663 kb on + strand, within Pf6N2E2_4333at 5055.663 kb on + strand, within Pf6N2E2_4333at 5055.663 kb on + strand, within Pf6N2E2_4333at 5055.664 kb on - strand, within Pf6N2E2_4333at 5055.664 kb on - strand, within Pf6N2E2_4333at 5055.771 kb on + strand, within Pf6N2E2_4333at 5055.771 kb on + strand, within Pf6N2E2_4333at 5055.771 kb on + strand, within Pf6N2E2_4333at 5055.772 kb on - strand, within Pf6N2E2_4333at 5055.772 kb on - strand, within Pf6N2E2_4333at 5055.772 kb on - strand, within Pf6N2E2_4333at 5055.772 kb on - strand, within Pf6N2E2_4333at 5055.772 kb on - strand, within Pf6N2E2_4333at 5055.772 kb on - strand, within Pf6N2E2_4333at 5055.772 kb on - strand, within Pf6N2E2_4333at 5055.940 kb on + strandat 5055.975 kb on - strandat 5056.175 kb on - strandat 5056.240 kb on + strandat 5056.240 kb on + strandat 5056.240 kb on + strandat 5056.240 kb on + strandat 5056.241 kb on - strandat 5056.255 kb on + strandat 5056.270 kb on + strandat 5056.270 kb on + strandat 5056.270 kb on + strandat 5056.270 kb on + strandat 5056.271 kb on - strandat 5056.271 kb on - strandat 5056.271 kb on - strandat 5056.273 kb on + strandat 5056.375 kb on + strand, within Pf6N2E2_4334at 5056.376 kb on - strand, within Pf6N2E2_4334at 5056.376 kb on - strand, within Pf6N2E2_4334at 5056.376 kb on - strand, within Pf6N2E2_4334at 5056.376 kb on - strand, within Pf6N2E2_4334at 5056.462 kb on + strand, within Pf6N2E2_4334at 5056.462 kb on + strand, within Pf6N2E2_4334at 5056.492 kb on + strand, within Pf6N2E2_4334at 5056.492 kb on + strand, within Pf6N2E2_4334at 5056.492 kb on + strand, within Pf6N2E2_4334at 5056.493 kb on - strand, within Pf6N2E2_4334at 5056.544 kb on - strand, within Pf6N2E2_4334at 5056.819 kb on + strand, within Pf6N2E2_4334at 5056.840 kb on + strand, within Pf6N2E2_4334at 5056.840 kb on + strand, within Pf6N2E2_4334at 5056.840 kb on + strand, within Pf6N2E2_4334at 5056.996 kb on + strand, within Pf6N2E2_4334at 5057.167 kb on + strand, within Pf6N2E2_4334at 5057.167 kb on + strand, within Pf6N2E2_4334at 5057.167 kb on + strand, within Pf6N2E2_4334at 5057.168 kb on - strand, within Pf6N2E2_4334at 5057.171 kb on - strand, within Pf6N2E2_4334at 5057.192 kb on - strand, within Pf6N2E2_4334at 5057.227 kb on + strand, within Pf6N2E2_4334at 5057.227 kb on + strand, within Pf6N2E2_4334at 5057.227 kb on + strand, within Pf6N2E2_4334at 5057.228 kb on - strand, within Pf6N2E2_4334at 5057.228 kb on - strand, within Pf6N2E2_4334at 5057.362 kb on + strand, within Pf6N2E2_4334at 5057.363 kb on - strand, within Pf6N2E2_4334at 5057.657 kb on + strandat 5057.657 kb on + strandat 5057.657 kb on + strandat 5057.658 kb on - strandat 5057.658 kb on - strandat 5057.658 kb on - strandat 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.778 kb on + strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5057.779 kb on - strand, within Pf6N2E2_4335at 5058.056 kb on + strand, within Pf6N2E2_4335at 5058.099 kb on + strand, within Pf6N2E2_4335at 5058.261 kb on + strandat 5058.262 kb on - strandat 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.408 kb on + strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.409 kb on - strand, within Pf6N2E2_4336at 5058.411 kb on + strand, within Pf6N2E2_4336at 5058.412 kb on - strand, within Pf6N2E2_4336at 5058.412 kb on - strand, within Pf6N2E2_4336at 5058.412 kb on - strand, within Pf6N2E2_4336at 5058.487 kb on + strand, within Pf6N2E2_4336at 5058.487 kb on + strand, within Pf6N2E2_4336

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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5,055,219 + Pf6N2E2_4332 0.64 +2.2
5,055,219 + Pf6N2E2_4332 0.64 +1.3
5,055,220 - Pf6N2E2_4332 0.64 +1.1
5,055,220 - Pf6N2E2_4332 0.64 +1.2
5,055,253 + Pf6N2E2_4332 0.71 +0.8
5,055,253 + Pf6N2E2_4332 0.71 +1.1
5,055,254 - Pf6N2E2_4332 0.72 -0.2
5,055,325 - Pf6N2E2_4332 0.87 +1.3
5,055,345 + -0.4
5,055,345 + +0.9
5,055,345 + -1.9
5,055,345 + +1.0
5,055,346 - +2.2
5,055,391 + +1.3
5,055,391 + +1.0
5,055,391 + +1.5
5,055,392 - +0.2
5,055,392 - +1.2
5,055,465 + +1.1
5,055,465 + -0.5
5,055,466 - -1.6
5,055,631 + Pf6N2E2_4333 0.34 +2.3
5,055,631 + Pf6N2E2_4333 0.34 +1.2
5,055,632 - Pf6N2E2_4333 0.34 +0.9
5,055,663 + Pf6N2E2_4333 0.41 +0.7
5,055,663 + Pf6N2E2_4333 0.41 +1.5
5,055,663 + Pf6N2E2_4333 0.41 -0.4
5,055,664 - Pf6N2E2_4333 0.41 -0.4
5,055,664 - Pf6N2E2_4333 0.41 +0.8
5,055,771 + Pf6N2E2_4333 0.63 +1.2
5,055,771 + Pf6N2E2_4333 0.63 +0.9
5,055,771 + Pf6N2E2_4333 0.63 -0.2
5,055,772 - Pf6N2E2_4333 0.63 +0.8
5,055,772 - Pf6N2E2_4333 0.63 +0.2
5,055,772 - Pf6N2E2_4333 0.63 +1.0
5,055,772 - Pf6N2E2_4333 0.63 +0.6
5,055,772 - Pf6N2E2_4333 0.63 +0.6
5,055,772 - Pf6N2E2_4333 0.63 -0.6
5,055,772 - Pf6N2E2_4333 0.63 +2.4
5,055,940 + -0.6
5,055,975 - +2.2
5,056,175 - -1.6
5,056,240 + +1.2
5,056,240 + +0.2
5,056,240 + +0.6
5,056,240 + +1.9
5,056,241 - -0.2
5,056,255 + +1.7
5,056,270 + +0.2
5,056,270 + +0.4
5,056,270 + +0.5
5,056,270 + +2.3
5,056,271 - -0.6
5,056,271 - -1.5
5,056,271 - +1.6
5,056,273 + +1.2
5,056,375 + Pf6N2E2_4334 0.13 +0.6
5,056,376 - Pf6N2E2_4334 0.14 +0.9
5,056,376 - Pf6N2E2_4334 0.14 +1.2
5,056,376 - Pf6N2E2_4334 0.14 +0.9
5,056,376 - Pf6N2E2_4334 0.14 -1.2
5,056,462 + Pf6N2E2_4334 0.19 +1.6
5,056,462 + Pf6N2E2_4334 0.19 +0.6
5,056,492 + Pf6N2E2_4334 0.21 +1.1
5,056,492 + Pf6N2E2_4334 0.21 +1.3
5,056,492 + Pf6N2E2_4334 0.21 +1.7
5,056,493 - Pf6N2E2_4334 0.21 +0.7
5,056,544 - Pf6N2E2_4334 0.25 +2.2
5,056,819 + Pf6N2E2_4334 0.43 -0.4
5,056,840 + Pf6N2E2_4334 0.44 +1.2
5,056,840 + Pf6N2E2_4334 0.44 +1.5
5,056,840 + Pf6N2E2_4334 0.44 -0.5
5,056,996 + Pf6N2E2_4334 0.55 +0.2
5,057,167 + Pf6N2E2_4334 0.66 +1.0
5,057,167 + Pf6N2E2_4334 0.66 +2.2
5,057,167 + Pf6N2E2_4334 0.66 +0.6
5,057,168 - Pf6N2E2_4334 0.66 +1.2
5,057,171 - Pf6N2E2_4334 0.66 +0.9
5,057,192 - Pf6N2E2_4334 0.68 -0.2
5,057,227 + Pf6N2E2_4334 0.70 -0.1
5,057,227 + Pf6N2E2_4334 0.70 +2.2
5,057,227 + Pf6N2E2_4334 0.70 +0.7
5,057,228 - Pf6N2E2_4334 0.70 -0.8
5,057,228 - Pf6N2E2_4334 0.70 +0.7
5,057,362 + Pf6N2E2_4334 0.79 +0.6
5,057,363 - Pf6N2E2_4334 0.79 -0.1
5,057,657 + +2.2
5,057,657 + -0.4
5,057,657 + +0.1
5,057,658 - +1.2
5,057,658 - -1.6
5,057,658 - +0.8
5,057,778 + Pf6N2E2_4335 0.21 +0.7
5,057,778 + Pf6N2E2_4335 0.21 +1.1
5,057,778 + Pf6N2E2_4335 0.21 +0.7
5,057,778 + Pf6N2E2_4335 0.21 -1.0
5,057,778 + Pf6N2E2_4335 0.21 +0.6
5,057,778 + Pf6N2E2_4335 0.21 -0.9
5,057,778 + Pf6N2E2_4335 0.21 +1.3
5,057,778 + Pf6N2E2_4335 0.21 +2.1
5,057,778 + Pf6N2E2_4335 0.21 +0.2
5,057,779 - Pf6N2E2_4335 0.21 +0.2
5,057,779 - Pf6N2E2_4335 0.21 -0.5
5,057,779 - Pf6N2E2_4335 0.21 +2.5
5,057,779 - Pf6N2E2_4335 0.21 -0.3
5,057,779 - Pf6N2E2_4335 0.21 +0.2
5,058,056 + Pf6N2E2_4335 0.76 -0.2
5,058,099 + Pf6N2E2_4335 0.84 +0.8
5,058,261 + +0.9
5,058,262 - +0.6
5,058,408 + Pf6N2E2_4336 0.14 +0.1
5,058,408 + Pf6N2E2_4336 0.14 +1.2
5,058,408 + Pf6N2E2_4336 0.14 +1.8
5,058,408 + Pf6N2E2_4336 0.14 +1.2
5,058,409 - Pf6N2E2_4336 0.14 +0.6
5,058,409 - Pf6N2E2_4336 0.14 +0.2
5,058,409 - Pf6N2E2_4336 0.14 +0.8
5,058,409 - Pf6N2E2_4336 0.14 +0.6
5,058,409 - Pf6N2E2_4336 0.14 +0.3
5,058,411 + Pf6N2E2_4336 0.14 +0.3
5,058,412 - Pf6N2E2_4336 0.15 +0.1
5,058,412 - Pf6N2E2_4336 0.15 -0.0
5,058,412 - Pf6N2E2_4336 0.15 +0.6
5,058,487 + Pf6N2E2_4336 0.22 +1.8
5,058,487 + Pf6N2E2_4336 0.22 +1.3

Or see this region's nucleotide sequence