Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25175 and BWI76_RS25180 are separated by 95 nucleotides BWI76_RS25180 and BWI76_RS25185 are separated by 19 nucleotides BWI76_RS25185 and BWI76_RS25190 are separated by 259 nucleotides BWI76_RS25190 and BWI76_RS25195 are separated by 198 nucleotides BWI76_RS25195 and BWI76_RS25200 are separated by 56 nucleotides
BWI76_RS25175: BWI76_RS25175 - EamA family transporter, at 5,238,998 to 5,239,963
_RS25175
BWI76_RS25180: BWI76_RS25180 - 50S ribosomal protein L27, at 5,240,059 to 5,240,316
_RS25180
BWI76_RS25185: BWI76_RS25185 - 50S ribosomal protein L21, at 5,240,336 to 5,240,647
_RS25185
BWI76_RS25190: BWI76_RS25190 - octaprenyl-diphosphate synthase, at 5,240,907 to 5,241,878
_RS25190
BWI76_RS25195: BWI76_RS25195 - maltose metabolism regulator, at 5,242,077 to 5,242,349
_RS25195
BWI76_RS25200: BWI76_RS25200 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 5,242,406 to 5,243,665
_RS25200
Position (kb) 5240
5241
5242 Strain fitness (log2 ratio) -1
0
1
2 at 5241.881 kb on - strand at 5242.065 kb on - strand at 5242.205 kb on + strand, within BWI76_RS25195 at 5242.213 kb on - strand, within BWI76_RS25195 at 5242.354 kb on + strand at 5242.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 5,241,881 - +0.2 5,242,065 - -0.0 5,242,205 + BWI76_RS25195 0.47 -0.1 5,242,213 - BWI76_RS25195 0.50 -1.1 5,242,354 + +0.3 5,242,371 + +1.8
Or see this region's nucleotide sequence