Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15820 and BWI76_RS15825 are separated by 427 nucleotides BWI76_RS15825 and BWI76_RS15830 are separated by 88 nucleotides BWI76_RS15830 and BWI76_RS15835 are separated by 7 nucleotides BWI76_RS15835 and BWI76_RS15840 are separated by 151 nucleotides
BWI76_RS15820: BWI76_RS15820 - hypothetical protein, at 3,289,748 to 3,289,951
_RS15820
BWI76_RS15825: BWI76_RS15825 - hypothetical protein, at 3,290,379 to 3,290,573
_RS15825
BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666
_RS15830
BWI76_RS15835: BWI76_RS15835 - hypothetical protein, at 3,291,674 to 3,291,871
_RS15835
BWI76_RS15840: BWI76_RS15840 - prophage protein, at 3,292,023 to 3,292,805
_RS15840
Position (kb)
3290
3291
3292 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 3289.664 kb on + strand at 3289.672 kb on - strand at 3289.753 kb on - strand at 3290.312 kb on + strand at 3290.455 kb on + strand, within BWI76_RS15825 at 3290.553 kb on + strand, within BWI76_RS15825 at 3290.576 kb on + strand at 3290.743 kb on + strand at 3290.827 kb on + strand, within BWI76_RS15830 at 3290.862 kb on - strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.869 kb on + strand, within BWI76_RS15830 at 3290.877 kb on - strand, within BWI76_RS15830 at 3290.889 kb on + strand, within BWI76_RS15830 at 3291.006 kb on + strand, within BWI76_RS15830 at 3291.068 kb on - strand, within BWI76_RS15830 at 3291.241 kb on + strand, within BWI76_RS15830 at 3291.274 kb on - strand, within BWI76_RS15830 at 3291.377 kb on - strand, within BWI76_RS15830 at 3291.400 kb on + strand, within BWI76_RS15830 at 3291.535 kb on - strand, within BWI76_RS15830 at 3291.559 kb on - strand, within BWI76_RS15830 at 3291.559 kb on - strand, within BWI76_RS15830 at 3291.589 kb on - strand at 3291.708 kb on - strand, within BWI76_RS15835 at 3291.716 kb on - strand, within BWI76_RS15835 at 3291.801 kb on + strand, within BWI76_RS15835 at 3291.830 kb on + strand, within BWI76_RS15835 at 3292.119 kb on + strand, within BWI76_RS15840 at 3292.119 kb on + strand, within BWI76_RS15840 at 3292.126 kb on - strand, within BWI76_RS15840 at 3292.127 kb on - strand, within BWI76_RS15840 at 3292.295 kb on + strand, within BWI76_RS15840 at 3292.349 kb on + strand, within BWI76_RS15840 at 3292.349 kb on - strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.528 kb on - strand, within BWI76_RS15840 at 3292.528 kb on - strand, within BWI76_RS15840
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 3,289,664 + +2.1 3,289,672 - -0.3 3,289,753 - -0.4 3,290,312 + -0.9 3,290,455 + BWI76_RS15825 0.39 -4.0 3,290,553 + BWI76_RS15825 0.89 -6.1 3,290,576 + -3.6 3,290,743 + -7.2 3,290,827 + BWI76_RS15830 0.16 -6.6 3,290,862 - BWI76_RS15830 0.20 -0.9 3,290,869 + BWI76_RS15830 0.21 -7.5 3,290,869 + BWI76_RS15830 0.21 -7.2 3,290,877 - BWI76_RS15830 0.21 +0.3 3,290,889 + BWI76_RS15830 0.23 -4.5 3,291,006 + BWI76_RS15830 0.34 -4.0 3,291,068 - BWI76_RS15830 0.40 +0.1 3,291,241 + BWI76_RS15830 0.58 -8.7 3,291,274 - BWI76_RS15830 0.61 +0.5 3,291,377 - BWI76_RS15830 0.71 +0.5 3,291,400 + BWI76_RS15830 0.73 -4.3 3,291,535 - BWI76_RS15830 0.87 -1.1 3,291,559 - BWI76_RS15830 0.89 -0.9 3,291,559 - BWI76_RS15830 0.89 +0.5 3,291,589 - +0.7 3,291,708 - BWI76_RS15835 0.17 +0.1 3,291,716 - BWI76_RS15835 0.21 +0.7 3,291,801 + BWI76_RS15835 0.64 -4.4 3,291,830 + BWI76_RS15835 0.79 -4.4 3,292,119 + BWI76_RS15840 0.12 -7.7 3,292,119 + BWI76_RS15840 0.12 -4.2 3,292,126 - BWI76_RS15840 0.13 +0.3 3,292,127 - BWI76_RS15840 0.13 -0.6 3,292,295 + BWI76_RS15840 0.35 -5.5 3,292,349 + BWI76_RS15840 0.42 -4.5 3,292,349 - BWI76_RS15840 0.42 -0.1 3,292,520 + BWI76_RS15840 0.63 -5.7 3,292,520 + BWI76_RS15840 0.63 -5.0 3,292,520 + BWI76_RS15840 0.63 -2.5 3,292,528 - BWI76_RS15840 0.64 -1.0 3,292,528 - BWI76_RS15840 0.64 -0.4
Or see this region's nucleotide sequence