Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08550 and BWI76_RS08555 are separated by 26 nucleotides BWI76_RS08555 and BWI76_RS08560 are separated by 3 nucleotides BWI76_RS08560 and BWI76_RS08565 are separated by 144 nucleotides BWI76_RS08565 and BWI76_RS08570 are separated by 35 nucleotides BWI76_RS08570 and BWI76_RS08580 are separated by 456 nucleotides BWI76_RS08580 and BWI76_RS08585 are separated by 35 nucleotides BWI76_RS08585 and BWI76_RS08590 overlap by 4 nucleotides
BWI76_RS08550: BWI76_RS08550 - tRNA-Lys, at 1,809,293 to 1,809,368
_RS08550
BWI76_RS08555: BWI76_RS08555 - tRNA-Val, at 1,809,395 to 1,809,470
_RS08555
BWI76_RS08560: BWI76_RS08560 - tRNA-Lys, at 1,809,474 to 1,809,549
_RS08560
BWI76_RS08565: BWI76_RS08565 - tRNA-Lys, at 1,809,694 to 1,809,769
_RS08565
BWI76_RS08570: BWI76_RS08570 - tRNA-Lys, at 1,809,805 to 1,809,880
_RS08570
BWI76_RS08580: BWI76_RS08580 - quinolinate synthetase, at 1,810,337 to 1,811,380
_RS08580
BWI76_RS08585: BWI76_RS08585 - nicotinamide riboside transporter PnuC, at 1,811,416 to 1,812,135
_RS08585
BWI76_RS08590: BWI76_RS08590 - zinc transporter ZitB, at 1,812,132 to 1,813,076
_RS08590
Position (kb)
1810
1811
1812 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1809.582 kb on + strand at 1810.013 kb on + strand at 1810.288 kb on - strand at 1810.504 kb on - strand, within BWI76_RS08580 at 1810.932 kb on + strand, within BWI76_RS08580 at 1811.226 kb on + strand, within BWI76_RS08580 at 1811.471 kb on + strand at 1811.481 kb on + strand at 1811.667 kb on - strand, within BWI76_RS08585 at 1811.805 kb on - strand, within BWI76_RS08585 at 1811.846 kb on + strand, within BWI76_RS08585
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 1,809,582 + -1.2 1,810,013 + -0.0 1,810,288 - -0.8 1,810,504 - BWI76_RS08580 0.16 -1.7 1,810,932 + BWI76_RS08580 0.57 -4.1 1,811,226 + BWI76_RS08580 0.85 -1.8 1,811,471 + -0.0 1,811,481 + -0.3 1,811,667 - BWI76_RS08585 0.35 +0.3 1,811,805 - BWI76_RS08585 0.54 -0.6 1,811,846 + BWI76_RS08585 0.60 -0.1
Or see this region's nucleotide sequence