Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04840

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04835 and BWI76_RS04840 are separated by 10 nucleotidesBWI76_RS04840 and BWI76_RS04845 are separated by 183 nucleotides BWI76_RS04835: BWI76_RS04835 - type II secretion system protein GspE, at 1,010,005 to 1,011,390 _RS04835 BWI76_RS04840: BWI76_RS04840 - prepilin peptidase-dependent pilin, at 1,011,401 to 1,011,832 _RS04840 BWI76_RS04845: BWI76_RS04845 - nicotinate-nucleotide pyrophosphorylase, at 1,012,016 to 1,012,909 _RS04845 Position (kb) 1011 1012Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1010.591 kb on + strand, within BWI76_RS04835at 1010.797 kb on - strand, within BWI76_RS04835at 1010.836 kb on - strand, within BWI76_RS04835at 1011.154 kb on + strand, within BWI76_RS04835at 1011.270 kb on + strandat 1011.506 kb on - strand, within BWI76_RS04840at 1011.553 kb on + strand, within BWI76_RS04840at 1011.670 kb on + strand, within BWI76_RS04840at 1011.698 kb on + strand, within BWI76_RS04840at 1011.706 kb on - strand, within BWI76_RS04840at 1011.808 kb on + strandat 1011.808 kb on + strandat 1012.036 kb on + strandat 1012.100 kb on - strandat 1012.194 kb on - strand, within BWI76_RS04845at 1012.418 kb on + strand, within BWI76_RS04845at 1012.426 kb on - strand, within BWI76_RS04845at 1012.802 kb on + strand, within BWI76_RS04845at 1012.802 kb on + strand, within BWI76_RS04845at 1012.810 kb on - strand, within BWI76_RS04845

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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1,010,591 + BWI76_RS04835 0.42 +0.5
1,010,797 - BWI76_RS04835 0.57 -0.5
1,010,836 - BWI76_RS04835 0.60 +1.0
1,011,154 + BWI76_RS04835 0.83 +0.5
1,011,270 + -0.6
1,011,506 - BWI76_RS04840 0.24 -0.2
1,011,553 + BWI76_RS04840 0.35 -0.6
1,011,670 + BWI76_RS04840 0.62 -0.2
1,011,698 + BWI76_RS04840 0.69 -0.7
1,011,706 - BWI76_RS04840 0.71 -0.3
1,011,808 + +0.1
1,011,808 + +0.7
1,012,036 + -3.9
1,012,100 - -2.6
1,012,194 - BWI76_RS04845 0.20 -2.7
1,012,418 + BWI76_RS04845 0.45 -4.0
1,012,426 - BWI76_RS04845 0.46 -3.9
1,012,802 + BWI76_RS04845 0.88 -4.8
1,012,802 + BWI76_RS04845 0.88 -2.2
1,012,810 - BWI76_RS04845 0.89 -2.6

Or see this region's nucleotide sequence