Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3396 and Pf6N2E2_3397 are separated by 365 nucleotides
Pf6N2E2_3396 - hypothetical protein, at 3,937,550 to 3,937,669
_3396
Pf6N2E2_3397 - Phage protein, at 3,938,035 to 3,939,618
_3397
Position (kb)
3937
3938 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3936.606 kb on + strand at 3936.606 kb on + strand at 3936.607 kb on - strand at 3936.607 kb on - strand at 3936.607 kb on - strand at 3936.683 kb on + strand at 3936.684 kb on - strand at 3936.687 kb on - strand at 3936.687 kb on - strand at 3936.687 kb on - strand at 3936.702 kb on + strand at 3936.702 kb on + strand at 3936.722 kb on + strand at 3936.722 kb on + strand at 3936.723 kb on - strand at 3936.723 kb on - strand at 3936.723 kb on - strand at 3936.760 kb on - strand at 3936.760 kb on - strand at 3936.760 kb on - strand at 3936.760 kb on - strand at 3936.825 kb on + strand at 3936.825 kb on + strand at 3936.826 kb on - strand at 3936.826 kb on - strand at 3936.826 kb on - strand at 3936.848 kb on + strand at 3936.849 kb on - strand at 3936.849 kb on - strand at 3936.887 kb on + strand at 3936.888 kb on - strand at 3936.888 kb on - strand at 3936.951 kb on - strand at 3936.982 kb on - strand at 3936.991 kb on - strand at 3936.991 kb on - strand at 3937.080 kb on - strand at 3937.080 kb on - strand at 3937.080 kb on - strand at 3937.100 kb on + strand at 3937.100 kb on + strand at 3937.100 kb on + strand at 3937.100 kb on + strand at 3937.101 kb on - strand at 3937.101 kb on - strand at 3937.101 kb on - strand at 3937.101 kb on - strand at 3937.101 kb on - strand at 3937.172 kb on + strand at 3937.173 kb on - strand at 3937.293 kb on + strand at 3937.293 kb on + strand at 3937.294 kb on - strand at 3937.324 kb on + strand at 3937.371 kb on + strand at 3937.371 kb on + strand at 3937.372 kb on - strand at 3937.372 kb on - strand at 3937.372 kb on - strand at 3937.372 kb on - strand at 3937.511 kb on + strand at 3937.511 kb on + strand at 3937.512 kb on - strand at 3937.512 kb on - strand at 3937.521 kb on - strand at 3937.521 kb on - strand at 3937.534 kb on + strand at 3937.534 kb on + strand at 3937.552 kb on - strand at 3937.552 kb on - strand at 3937.612 kb on + strand, within Pf6N2E2_3396 at 3937.612 kb on + strand, within Pf6N2E2_3396 at 3937.615 kb on + strand, within Pf6N2E2_3396 at 3937.615 kb on + strand, within Pf6N2E2_3396 at 3937.644 kb on + strand, within Pf6N2E2_3396 at 3937.644 kb on + strand, within Pf6N2E2_3396 at 3937.644 kb on + strand, within Pf6N2E2_3396 at 3937.645 kb on - strand, within Pf6N2E2_3396 at 3937.645 kb on - strand, within Pf6N2E2_3396 at 3937.645 kb on - strand, within Pf6N2E2_3396 at 3937.645 kb on - strand, within Pf6N2E2_3396 at 3937.645 kb on - strand, within Pf6N2E2_3396 at 3937.711 kb on + strand at 3937.711 kb on + strand at 3937.712 kb on - strand at 3937.712 kb on - strand at 3937.712 kb on - strand at 3937.713 kb on + strand at 3937.714 kb on - strand at 3937.725 kb on + strand at 3937.725 kb on + strand at 3937.725 kb on + strand at 3937.726 kb on - strand at 3937.726 kb on - strand at 3937.726 kb on - strand at 3937.726 kb on - strand at 3937.789 kb on - strand at 3937.789 kb on - strand at 3937.866 kb on - strand at 3937.866 kb on - strand at 3937.882 kb on + strand at 3937.900 kb on + strand at 3937.900 kb on + strand at 3937.900 kb on + strand at 3937.900 kb on + strand at 3937.900 kb on + strand at 3937.901 kb on - strand at 3937.901 kb on - strand at 3937.937 kb on + strand at 3938.046 kb on + strand at 3938.046 kb on + strand at 3938.047 kb on - strand at 3938.047 kb on - strand at 3938.055 kb on - strand at 3938.130 kb on + strand at 3938.131 kb on - strand at 3938.131 kb on - strand at 3938.132 kb on + strand at 3938.133 kb on - strand at 3938.483 kb on + strand, within Pf6N2E2_3397 at 3938.525 kb on + strand, within Pf6N2E2_3397
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 3,936,606 + +1.9 3,936,606 + -1.4 3,936,607 - -0.6 3,936,607 - -0.2 3,936,607 - +0.6 3,936,683 + -0.4 3,936,684 - +1.6 3,936,687 - +0.4 3,936,687 - +0.7 3,936,687 - -0.9 3,936,702 + -1.1 3,936,702 + -0.2 3,936,722 + -0.2 3,936,722 + +0.6 3,936,723 - +1.4 3,936,723 - +1.4 3,936,723 - -0.2 3,936,760 - +1.4 3,936,760 - -0.2 3,936,760 - +1.4 3,936,760 - +1.4 3,936,825 + -0.6 3,936,825 + +1.4 3,936,826 - -0.2 3,936,826 - -0.1 3,936,826 - -0.5 3,936,848 + -1.2 3,936,849 - -0.2 3,936,849 - -0.6 3,936,887 + +1.4 3,936,888 - -0.0 3,936,888 - -0.1 3,936,951 - +0.4 3,936,982 - +0.3 3,936,991 - -0.2 3,936,991 - +0.7 3,937,080 - +0.0 3,937,080 - +0.0 3,937,080 - +1.2 3,937,100 + -0.4 3,937,100 + +1.4 3,937,100 + -0.9 3,937,100 + -0.5 3,937,101 - +0.1 3,937,101 - -0.9 3,937,101 - -0.7 3,937,101 - -0.5 3,937,101 - -0.8 3,937,172 + +0.1 3,937,173 - +0.4 3,937,293 + +1.4 3,937,293 + -0.2 3,937,294 - -1.4 3,937,324 + -1.4 3,937,371 + +0.4 3,937,371 + +0.8 3,937,372 - +1.4 3,937,372 - +0.4 3,937,372 - +1.4 3,937,372 - -0.7 3,937,511 + +0.7 3,937,511 + +0.1 3,937,512 - -1.0 3,937,512 - +0.8 3,937,521 - -0.1 3,937,521 - -1.0 3,937,534 + -1.9 3,937,534 + +0.2 3,937,552 - +1.4 3,937,552 - -0.4 3,937,612 + Pf6N2E2_3396 0.52 -0.5 3,937,612 + Pf6N2E2_3396 0.52 -0.7 3,937,615 + Pf6N2E2_3396 0.54 -0.9 3,937,615 + Pf6N2E2_3396 0.54 +1.7 3,937,644 + Pf6N2E2_3396 0.78 -1.8 3,937,644 + Pf6N2E2_3396 0.78 +0.4 3,937,644 + Pf6N2E2_3396 0.78 +0.4 3,937,645 - Pf6N2E2_3396 0.79 -2.6 3,937,645 - Pf6N2E2_3396 0.79 -2.4 3,937,645 - Pf6N2E2_3396 0.79 -0.6 3,937,645 - Pf6N2E2_3396 0.79 +0.4 3,937,645 - Pf6N2E2_3396 0.79 +0.4 3,937,711 + -0.5 3,937,711 + +1.4 3,937,712 - +0.4 3,937,712 - -0.4 3,937,712 - -0.4 3,937,713 + +1.1 3,937,714 - +0.5 3,937,725 + +1.4 3,937,725 + -0.9 3,937,725 + -1.6 3,937,726 - +0.5 3,937,726 - -1.3 3,937,726 - -2.1 3,937,726 - -0.0 3,937,789 - +0.6 3,937,789 - -1.8 3,937,866 - +2.4 3,937,866 - +0.4 3,937,882 + +0.2 3,937,900 + +0.4 3,937,900 + +1.4 3,937,900 + +0.8 3,937,900 + -0.2 3,937,900 + +1.4 3,937,901 - -0.0 3,937,901 - +1.7 3,937,937 + -0.1 3,938,046 + +0.7 3,938,046 + +1.4 3,938,047 - +0.1 3,938,047 - +0.7 3,938,055 - -0.0 3,938,130 + +0.1 3,938,131 - +1.4 3,938,131 - +1.0 3,938,132 + -0.7 3,938,133 - -0.5 3,938,483 + Pf6N2E2_3397 0.28 -0.6 3,938,525 + Pf6N2E2_3397 0.31 -2.2
Or see this region's nucleotide sequence