Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1677

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1675 and Pf6N2E2_1676 are separated by 10 nucleotidesPf6N2E2_1676 and Pf6N2E2_1677 are separated by 157 nucleotidesPf6N2E2_1677 and Pf6N2E2_1678 are separated by 121 nucleotides Pf6N2E2_1675 - Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16), at 1,981,221 to 1,982,417 _1675 Pf6N2E2_1676 - conserved protein associated with acetyl-CoA C-acyltransferase, at 1,982,428 to 1,982,868 _1676 Pf6N2E2_1677 - Chalcone synthase (EC 2.3.1.74), at 1,983,026 to 1,984,075 _1677 Pf6N2E2_1678 - Major facilitator family transporter, at 1,984,197 to 1,985,468 _1678 Position (kb) 1983 1984 1985Strain fitness (log2 ratio) -2 -1 0 1 2at 1982.064 kb on + strand, within Pf6N2E2_1675at 1982.158 kb on + strand, within Pf6N2E2_1675at 1982.158 kb on + strand, within Pf6N2E2_1675at 1982.158 kb on + strand, within Pf6N2E2_1675at 1982.159 kb on - strand, within Pf6N2E2_1675at 1982.203 kb on + strand, within Pf6N2E2_1675at 1982.203 kb on + strand, within Pf6N2E2_1675at 1982.203 kb on + strand, within Pf6N2E2_1675at 1982.291 kb on + strand, within Pf6N2E2_1675at 1982.674 kb on + strand, within Pf6N2E2_1676at 1982.747 kb on + strand, within Pf6N2E2_1676at 1982.747 kb on + strand, within Pf6N2E2_1676at 1982.747 kb on + strand, within Pf6N2E2_1676at 1982.845 kb on + strandat 1982.845 kb on + strandat 1982.845 kb on + strandat 1982.846 kb on - strandat 1982.855 kb on + strandat 1982.866 kb on + strandat 1982.995 kb on - strandat 1983.010 kb on + strandat 1983.032 kb on - strandat 1983.065 kb on + strandat 1983.066 kb on - strandat 1983.066 kb on - strandat 1983.191 kb on - strand, within Pf6N2E2_1677at 1983.411 kb on + strand, within Pf6N2E2_1677at 1983.665 kb on + strand, within Pf6N2E2_1677at 1983.665 kb on + strand, within Pf6N2E2_1677at 1983.689 kb on + strand, within Pf6N2E2_1677at 1983.689 kb on + strand, within Pf6N2E2_1677at 1983.689 kb on + strand, within Pf6N2E2_1677at 1983.690 kb on - strand, within Pf6N2E2_1677at 1983.690 kb on - strand, within Pf6N2E2_1677at 1983.690 kb on - strand, within Pf6N2E2_1677at 1983.698 kb on + strand, within Pf6N2E2_1677at 1983.699 kb on - strand, within Pf6N2E2_1677at 1983.699 kb on - strand, within Pf6N2E2_1677at 1983.792 kb on - strand, within Pf6N2E2_1677at 1984.130 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.209 kb on + strandat 1984.210 kb on - strandat 1984.210 kb on - strandat 1984.210 kb on - strandat 1984.210 kb on - strandat 1984.282 kb on + strandat 1984.283 kb on - strandat 1984.302 kb on - strandat 1984.347 kb on + strand, within Pf6N2E2_1678at 1984.347 kb on + strand, within Pf6N2E2_1678at 1984.348 kb on - strand, within Pf6N2E2_1678at 1984.574 kb on + strand, within Pf6N2E2_1678at 1984.624 kb on + strand, within Pf6N2E2_1678at 1984.687 kb on + strand, within Pf6N2E2_1678at 1984.687 kb on + strand, within Pf6N2E2_1678at 1984.688 kb on - strand, within Pf6N2E2_1678at 1984.750 kb on + strand, within Pf6N2E2_1678at 1984.761 kb on + strand, within Pf6N2E2_1678at 1984.761 kb on + strand, within Pf6N2E2_1678at 1984.761 kb on + strand, within Pf6N2E2_1678at 1984.762 kb on - strand, within Pf6N2E2_1678at 1984.769 kb on + strand, within Pf6N2E2_1678at 1984.769 kb on + strand, within Pf6N2E2_1678at 1984.769 kb on + strand, within Pf6N2E2_1678at 1984.769 kb on + strand, within Pf6N2E2_1678at 1984.769 kb on + strand, within Pf6N2E2_1678at 1984.770 kb on - strand, within Pf6N2E2_1678at 1984.776 kb on + strand, within Pf6N2E2_1678at 1984.776 kb on + strand, within Pf6N2E2_1678at 1984.776 kb on + strand, within Pf6N2E2_1678at 1984.776 kb on + strand, within Pf6N2E2_1678at 1984.817 kb on + strand, within Pf6N2E2_1678at 1984.817 kb on + strand, within Pf6N2E2_1678at 1984.818 kb on - strand, within Pf6N2E2_1678at 1984.891 kb on + strand, within Pf6N2E2_1678at 1984.892 kb on - strand, within Pf6N2E2_1678at 1984.892 kb on - strand, within Pf6N2E2_1678at 1984.892 kb on - strand, within Pf6N2E2_1678at 1984.892 kb on - strand, within Pf6N2E2_1678at 1984.928 kb on + strand, within Pf6N2E2_1678at 1984.932 kb on + strand, within Pf6N2E2_1678at 1984.933 kb on - strand, within Pf6N2E2_1678

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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1,982,064 + Pf6N2E2_1675 0.70 +1.4
1,982,158 + Pf6N2E2_1675 0.78 -0.4
1,982,158 + Pf6N2E2_1675 0.78 +0.6
1,982,158 + Pf6N2E2_1675 0.78 -1.7
1,982,159 - Pf6N2E2_1675 0.78 +0.6
1,982,203 + Pf6N2E2_1675 0.82 -0.4
1,982,203 + Pf6N2E2_1675 0.82 -0.4
1,982,203 + Pf6N2E2_1675 0.82 -1.1
1,982,291 + Pf6N2E2_1675 0.89 +0.6
1,982,674 + Pf6N2E2_1676 0.56 -0.7
1,982,747 + Pf6N2E2_1676 0.72 -0.9
1,982,747 + Pf6N2E2_1676 0.72 -0.1
1,982,747 + Pf6N2E2_1676 0.72 +0.6
1,982,845 + -0.4
1,982,845 + +0.6
1,982,845 + -0.4
1,982,846 - +0.6
1,982,855 + +0.6
1,982,866 + -0.1
1,982,995 - -1.4
1,983,010 + -0.9
1,983,032 - +1.2
1,983,065 + -1.1
1,983,066 - +2.6
1,983,066 - -0.9
1,983,191 - Pf6N2E2_1677 0.16 -0.4
1,983,411 + Pf6N2E2_1677 0.37 +0.6
1,983,665 + Pf6N2E2_1677 0.61 -0.4
1,983,665 + Pf6N2E2_1677 0.61 -2.4
1,983,689 + Pf6N2E2_1677 0.63 -1.8
1,983,689 + Pf6N2E2_1677 0.63 -0.7
1,983,689 + Pf6N2E2_1677 0.63 -1.4
1,983,690 - Pf6N2E2_1677 0.63 +0.6
1,983,690 - Pf6N2E2_1677 0.63 -0.9
1,983,690 - Pf6N2E2_1677 0.63 +0.6
1,983,698 + Pf6N2E2_1677 0.64 +0.6
1,983,699 - Pf6N2E2_1677 0.64 +0.6
1,983,699 - Pf6N2E2_1677 0.64 +0.6
1,983,792 - Pf6N2E2_1677 0.73 -0.4
1,984,130 + +0.6
1,984,209 + +0.9
1,984,209 + +0.6
1,984,209 + -1.7
1,984,209 + -0.4
1,984,209 + +0.6
1,984,209 + +0.9
1,984,209 + -0.9
1,984,209 + -0.8
1,984,209 + +0.6
1,984,210 - +0.6
1,984,210 - +0.4
1,984,210 - -0.9
1,984,210 - -0.9
1,984,282 + -0.9
1,984,283 - +0.6
1,984,302 - -0.5
1,984,347 + Pf6N2E2_1678 0.12 +0.4
1,984,347 + Pf6N2E2_1678 0.12 -0.1
1,984,348 - Pf6N2E2_1678 0.12 +0.6
1,984,574 + Pf6N2E2_1678 0.30 -1.7
1,984,624 + Pf6N2E2_1678 0.34 -1.9
1,984,687 + Pf6N2E2_1678 0.39 +1.2
1,984,687 + Pf6N2E2_1678 0.39 +0.6
1,984,688 - Pf6N2E2_1678 0.39 -1.7
1,984,750 + Pf6N2E2_1678 0.43 -0.4
1,984,761 + Pf6N2E2_1678 0.44 -0.4
1,984,761 + Pf6N2E2_1678 0.44 +0.6
1,984,761 + Pf6N2E2_1678 0.44 -0.2
1,984,762 - Pf6N2E2_1678 0.44 -0.9
1,984,769 + Pf6N2E2_1678 0.45 +1.8
1,984,769 + Pf6N2E2_1678 0.45 +0.6
1,984,769 + Pf6N2E2_1678 0.45 -0.8
1,984,769 + Pf6N2E2_1678 0.45 -2.5
1,984,769 + Pf6N2E2_1678 0.45 -1.4
1,984,770 - Pf6N2E2_1678 0.45 -0.5
1,984,776 + Pf6N2E2_1678 0.46 -0.7
1,984,776 + Pf6N2E2_1678 0.46 +0.3
1,984,776 + Pf6N2E2_1678 0.46 +0.1
1,984,776 + Pf6N2E2_1678 0.46 -0.7
1,984,817 + Pf6N2E2_1678 0.49 -0.3
1,984,817 + Pf6N2E2_1678 0.49 -1.4
1,984,818 - Pf6N2E2_1678 0.49 +0.2
1,984,891 + Pf6N2E2_1678 0.55 +0.6
1,984,892 - Pf6N2E2_1678 0.55 -0.5
1,984,892 - Pf6N2E2_1678 0.55 +0.6
1,984,892 - Pf6N2E2_1678 0.55 -0.4
1,984,892 - Pf6N2E2_1678 0.55 +0.6
1,984,928 + Pf6N2E2_1678 0.57 -0.4
1,984,932 + Pf6N2E2_1678 0.58 -1.7
1,984,933 - Pf6N2E2_1678 0.58 -0.6

Or see this region's nucleotide sequence