Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1675 and Pf6N2E2_1676 are separated by 10 nucleotides Pf6N2E2_1676 and Pf6N2E2_1677 are separated by 157 nucleotides Pf6N2E2_1677 and Pf6N2E2_1678 are separated by 121 nucleotides
Pf6N2E2_1675 - Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16), at 1,981,221 to 1,982,417
_1675
Pf6N2E2_1676 - conserved protein associated with acetyl-CoA C-acyltransferase, at 1,982,428 to 1,982,868
_1676
Pf6N2E2_1677 - Chalcone synthase (EC 2.3.1.74), at 1,983,026 to 1,984,075
_1677
Pf6N2E2_1678 - Major facilitator family transporter, at 1,984,197 to 1,985,468
_1678
Position (kb)
1983
1984
1985 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1982.064 kb on + strand, within Pf6N2E2_1675 at 1982.158 kb on + strand, within Pf6N2E2_1675 at 1982.158 kb on + strand, within Pf6N2E2_1675 at 1982.158 kb on + strand, within Pf6N2E2_1675 at 1982.159 kb on - strand, within Pf6N2E2_1675 at 1982.203 kb on + strand, within Pf6N2E2_1675 at 1982.203 kb on + strand, within Pf6N2E2_1675 at 1982.203 kb on + strand, within Pf6N2E2_1675 at 1982.291 kb on + strand, within Pf6N2E2_1675 at 1982.674 kb on + strand, within Pf6N2E2_1676 at 1982.747 kb on + strand, within Pf6N2E2_1676 at 1982.747 kb on + strand, within Pf6N2E2_1676 at 1982.747 kb on + strand, within Pf6N2E2_1676 at 1982.845 kb on + strand at 1982.845 kb on + strand at 1982.845 kb on + strand at 1982.846 kb on - strand at 1982.855 kb on + strand at 1982.866 kb on + strand at 1982.995 kb on - strand at 1983.010 kb on + strand at 1983.032 kb on - strand at 1983.065 kb on + strand at 1983.066 kb on - strand at 1983.066 kb on - strand at 1983.191 kb on - strand, within Pf6N2E2_1677 at 1983.411 kb on + strand, within Pf6N2E2_1677 at 1983.665 kb on + strand, within Pf6N2E2_1677 at 1983.665 kb on + strand, within Pf6N2E2_1677 at 1983.689 kb on + strand, within Pf6N2E2_1677 at 1983.689 kb on + strand, within Pf6N2E2_1677 at 1983.689 kb on + strand, within Pf6N2E2_1677 at 1983.690 kb on - strand, within Pf6N2E2_1677 at 1983.690 kb on - strand, within Pf6N2E2_1677 at 1983.690 kb on - strand, within Pf6N2E2_1677 at 1983.698 kb on + strand, within Pf6N2E2_1677 at 1983.699 kb on - strand, within Pf6N2E2_1677 at 1983.699 kb on - strand, within Pf6N2E2_1677 at 1983.792 kb on - strand, within Pf6N2E2_1677 at 1984.130 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.209 kb on + strand at 1984.210 kb on - strand at 1984.210 kb on - strand at 1984.210 kb on - strand at 1984.210 kb on - strand at 1984.282 kb on + strand at 1984.283 kb on - strand at 1984.302 kb on - strand at 1984.347 kb on + strand, within Pf6N2E2_1678 at 1984.347 kb on + strand, within Pf6N2E2_1678 at 1984.348 kb on - strand, within Pf6N2E2_1678 at 1984.574 kb on + strand, within Pf6N2E2_1678 at 1984.624 kb on + strand, within Pf6N2E2_1678 at 1984.687 kb on + strand, within Pf6N2E2_1678 at 1984.687 kb on + strand, within Pf6N2E2_1678 at 1984.688 kb on - strand, within Pf6N2E2_1678 at 1984.750 kb on + strand, within Pf6N2E2_1678 at 1984.761 kb on + strand, within Pf6N2E2_1678 at 1984.761 kb on + strand, within Pf6N2E2_1678 at 1984.761 kb on + strand, within Pf6N2E2_1678 at 1984.762 kb on - strand, within Pf6N2E2_1678 at 1984.769 kb on + strand, within Pf6N2E2_1678 at 1984.769 kb on + strand, within Pf6N2E2_1678 at 1984.769 kb on + strand, within Pf6N2E2_1678 at 1984.769 kb on + strand, within Pf6N2E2_1678 at 1984.769 kb on + strand, within Pf6N2E2_1678 at 1984.770 kb on - strand, within Pf6N2E2_1678 at 1984.776 kb on + strand, within Pf6N2E2_1678 at 1984.776 kb on + strand, within Pf6N2E2_1678 at 1984.776 kb on + strand, within Pf6N2E2_1678 at 1984.776 kb on + strand, within Pf6N2E2_1678 at 1984.817 kb on + strand, within Pf6N2E2_1678 at 1984.817 kb on + strand, within Pf6N2E2_1678 at 1984.818 kb on - strand, within Pf6N2E2_1678 at 1984.891 kb on + strand, within Pf6N2E2_1678 at 1984.892 kb on - strand, within Pf6N2E2_1678 at 1984.892 kb on - strand, within Pf6N2E2_1678 at 1984.892 kb on - strand, within Pf6N2E2_1678 at 1984.892 kb on - strand, within Pf6N2E2_1678 at 1984.928 kb on + strand, within Pf6N2E2_1678 at 1984.932 kb on + strand, within Pf6N2E2_1678 at 1984.933 kb on - strand, within Pf6N2E2_1678
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 1,982,064 + Pf6N2E2_1675 0.70 +1.4 1,982,158 + Pf6N2E2_1675 0.78 -0.4 1,982,158 + Pf6N2E2_1675 0.78 +0.6 1,982,158 + Pf6N2E2_1675 0.78 -1.7 1,982,159 - Pf6N2E2_1675 0.78 +0.6 1,982,203 + Pf6N2E2_1675 0.82 -0.4 1,982,203 + Pf6N2E2_1675 0.82 -0.4 1,982,203 + Pf6N2E2_1675 0.82 -1.1 1,982,291 + Pf6N2E2_1675 0.89 +0.6 1,982,674 + Pf6N2E2_1676 0.56 -0.7 1,982,747 + Pf6N2E2_1676 0.72 -0.9 1,982,747 + Pf6N2E2_1676 0.72 -0.1 1,982,747 + Pf6N2E2_1676 0.72 +0.6 1,982,845 + -0.4 1,982,845 + +0.6 1,982,845 + -0.4 1,982,846 - +0.6 1,982,855 + +0.6 1,982,866 + -0.1 1,982,995 - -1.4 1,983,010 + -0.9 1,983,032 - +1.2 1,983,065 + -1.1 1,983,066 - +2.6 1,983,066 - -0.9 1,983,191 - Pf6N2E2_1677 0.16 -0.4 1,983,411 + Pf6N2E2_1677 0.37 +0.6 1,983,665 + Pf6N2E2_1677 0.61 -0.4 1,983,665 + Pf6N2E2_1677 0.61 -2.4 1,983,689 + Pf6N2E2_1677 0.63 -1.8 1,983,689 + Pf6N2E2_1677 0.63 -0.7 1,983,689 + Pf6N2E2_1677 0.63 -1.4 1,983,690 - Pf6N2E2_1677 0.63 +0.6 1,983,690 - Pf6N2E2_1677 0.63 -0.9 1,983,690 - Pf6N2E2_1677 0.63 +0.6 1,983,698 + Pf6N2E2_1677 0.64 +0.6 1,983,699 - Pf6N2E2_1677 0.64 +0.6 1,983,699 - Pf6N2E2_1677 0.64 +0.6 1,983,792 - Pf6N2E2_1677 0.73 -0.4 1,984,130 + +0.6 1,984,209 + +0.9 1,984,209 + +0.6 1,984,209 + -1.7 1,984,209 + -0.4 1,984,209 + +0.6 1,984,209 + +0.9 1,984,209 + -0.9 1,984,209 + -0.8 1,984,209 + +0.6 1,984,210 - +0.6 1,984,210 - +0.4 1,984,210 - -0.9 1,984,210 - -0.9 1,984,282 + -0.9 1,984,283 - +0.6 1,984,302 - -0.5 1,984,347 + Pf6N2E2_1678 0.12 +0.4 1,984,347 + Pf6N2E2_1678 0.12 -0.1 1,984,348 - Pf6N2E2_1678 0.12 +0.6 1,984,574 + Pf6N2E2_1678 0.30 -1.7 1,984,624 + Pf6N2E2_1678 0.34 -1.9 1,984,687 + Pf6N2E2_1678 0.39 +1.2 1,984,687 + Pf6N2E2_1678 0.39 +0.6 1,984,688 - Pf6N2E2_1678 0.39 -1.7 1,984,750 + Pf6N2E2_1678 0.43 -0.4 1,984,761 + Pf6N2E2_1678 0.44 -0.4 1,984,761 + Pf6N2E2_1678 0.44 +0.6 1,984,761 + Pf6N2E2_1678 0.44 -0.2 1,984,762 - Pf6N2E2_1678 0.44 -0.9 1,984,769 + Pf6N2E2_1678 0.45 +1.8 1,984,769 + Pf6N2E2_1678 0.45 +0.6 1,984,769 + Pf6N2E2_1678 0.45 -0.8 1,984,769 + Pf6N2E2_1678 0.45 -2.5 1,984,769 + Pf6N2E2_1678 0.45 -1.4 1,984,770 - Pf6N2E2_1678 0.45 -0.5 1,984,776 + Pf6N2E2_1678 0.46 -0.7 1,984,776 + Pf6N2E2_1678 0.46 +0.3 1,984,776 + Pf6N2E2_1678 0.46 +0.1 1,984,776 + Pf6N2E2_1678 0.46 -0.7 1,984,817 + Pf6N2E2_1678 0.49 -0.3 1,984,817 + Pf6N2E2_1678 0.49 -1.4 1,984,818 - Pf6N2E2_1678 0.49 +0.2 1,984,891 + Pf6N2E2_1678 0.55 +0.6 1,984,892 - Pf6N2E2_1678 0.55 -0.5 1,984,892 - Pf6N2E2_1678 0.55 +0.6 1,984,892 - Pf6N2E2_1678 0.55 -0.4 1,984,892 - Pf6N2E2_1678 0.55 +0.6 1,984,928 + Pf6N2E2_1678 0.57 -0.4 1,984,932 + Pf6N2E2_1678 0.58 -1.7 1,984,933 - Pf6N2E2_1678 0.58 -0.6
Or see this region's nucleotide sequence