Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1770 and Pf6N2E2_1771 are separated by 56 nucleotides Pf6N2E2_1771 and Pf6N2E2_1772 are separated by 65 nucleotides
Pf6N2E2_1770 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 2,091,365 to 2,092,438
_1770
Pf6N2E2_1771 - Response regulator, at 2,092,495 to 2,093,475
_1771
Pf6N2E2_1772 - Signal transduction histidine kinase, at 2,093,541 to 2,096,411
_1772
Position (kb)
2092
2093
2094 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2091.507 kb on - strand, within Pf6N2E2_1770 at 2091.507 kb on - strand, within Pf6N2E2_1770 at 2091.729 kb on - strand, within Pf6N2E2_1770 at 2091.729 kb on - strand, within Pf6N2E2_1770 at 2091.792 kb on + strand, within Pf6N2E2_1770 at 2091.792 kb on + strand, within Pf6N2E2_1770 at 2091.792 kb on + strand, within Pf6N2E2_1770 at 2091.793 kb on - strand, within Pf6N2E2_1770 at 2091.793 kb on - strand, within Pf6N2E2_1770 at 2091.905 kb on + strand, within Pf6N2E2_1770 at 2091.906 kb on - strand, within Pf6N2E2_1770 at 2091.906 kb on - strand, within Pf6N2E2_1770 at 2091.906 kb on - strand, within Pf6N2E2_1770 at 2091.945 kb on - strand, within Pf6N2E2_1770 at 2091.983 kb on + strand, within Pf6N2E2_1770 at 2091.993 kb on - strand, within Pf6N2E2_1770 at 2091.993 kb on - strand, within Pf6N2E2_1770 at 2092.010 kb on + strand, within Pf6N2E2_1770 at 2092.010 kb on + strand, within Pf6N2E2_1770 at 2092.011 kb on - strand, within Pf6N2E2_1770 at 2092.122 kb on - strand, within Pf6N2E2_1770 at 2092.217 kb on + strand, within Pf6N2E2_1770 at 2092.217 kb on + strand, within Pf6N2E2_1770 at 2092.217 kb on + strand, within Pf6N2E2_1770 at 2092.217 kb on + strand, within Pf6N2E2_1770 at 2092.217 kb on + strand, within Pf6N2E2_1770 at 2092.218 kb on - strand, within Pf6N2E2_1770 at 2092.266 kb on - strand, within Pf6N2E2_1770 at 2092.331 kb on + strand at 2092.365 kb on + strand at 2092.423 kb on + strand at 2092.424 kb on - strand at 2092.532 kb on - strand at 2092.639 kb on - strand, within Pf6N2E2_1771 at 2092.641 kb on - strand, within Pf6N2E2_1771 at 2092.641 kb on - strand, within Pf6N2E2_1771 at 2092.657 kb on - strand, within Pf6N2E2_1771 at 2092.668 kb on - strand, within Pf6N2E2_1771 at 2092.668 kb on - strand, within Pf6N2E2_1771 at 2092.668 kb on - strand, within Pf6N2E2_1771 at 2092.668 kb on - strand, within Pf6N2E2_1771 at 2092.903 kb on + strand, within Pf6N2E2_1771 at 2092.903 kb on + strand, within Pf6N2E2_1771 at 2092.904 kb on - strand, within Pf6N2E2_1771 at 2093.014 kb on - strand, within Pf6N2E2_1771 at 2093.022 kb on + strand, within Pf6N2E2_1771 at 2093.022 kb on + strand, within Pf6N2E2_1771 at 2093.022 kb on + strand, within Pf6N2E2_1771 at 2093.022 kb on + strand, within Pf6N2E2_1771 at 2093.022 kb on + strand, within Pf6N2E2_1771 at 2093.022 kb on + strand, within Pf6N2E2_1771 at 2093.023 kb on - strand, within Pf6N2E2_1771 at 2093.023 kb on - strand, within Pf6N2E2_1771 at 2093.023 kb on - strand, within Pf6N2E2_1771 at 2093.023 kb on - strand, within Pf6N2E2_1771 at 2093.049 kb on - strand, within Pf6N2E2_1771 at 2093.088 kb on - strand, within Pf6N2E2_1771 at 2093.088 kb on - strand, within Pf6N2E2_1771 at 2093.088 kb on - strand, within Pf6N2E2_1771 at 2093.187 kb on + strand, within Pf6N2E2_1771 at 2093.187 kb on + strand, within Pf6N2E2_1771 at 2093.188 kb on - strand, within Pf6N2E2_1771 at 2093.329 kb on - strand, within Pf6N2E2_1771 at 2093.329 kb on - strand, within Pf6N2E2_1771 at 2093.556 kb on + strand at 2093.556 kb on + strand at 2093.556 kb on + strand at 2093.557 kb on - strand at 2093.557 kb on - strand at 2093.557 kb on - strand at 2093.557 kb on - strand at 2093.557 kb on - strand at 2093.601 kb on - strand at 2093.601 kb on - strand at 2093.779 kb on - strand at 2093.779 kb on - strand at 2093.825 kb on + strand at 2094.176 kb on - strand, within Pf6N2E2_1772 at 2094.176 kb on - strand, within Pf6N2E2_1772 at 2094.318 kb on - strand, within Pf6N2E2_1772 at 2094.318 kb on - strand, within Pf6N2E2_1772 at 2094.412 kb on - strand, within Pf6N2E2_1772
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 2,091,507 - Pf6N2E2_1770 0.13 -0.3 2,091,507 - Pf6N2E2_1770 0.13 +0.8 2,091,729 - Pf6N2E2_1770 0.34 +2.0 2,091,729 - Pf6N2E2_1770 0.34 +0.1 2,091,792 + Pf6N2E2_1770 0.40 -0.2 2,091,792 + Pf6N2E2_1770 0.40 -0.2 2,091,792 + Pf6N2E2_1770 0.40 -0.4 2,091,793 - Pf6N2E2_1770 0.40 -1.2 2,091,793 - Pf6N2E2_1770 0.40 -1.2 2,091,905 + Pf6N2E2_1770 0.50 +1.4 2,091,906 - Pf6N2E2_1770 0.50 +0.7 2,091,906 - Pf6N2E2_1770 0.50 -0.2 2,091,906 - Pf6N2E2_1770 0.50 -0.2 2,091,945 - Pf6N2E2_1770 0.54 -0.2 2,091,983 + Pf6N2E2_1770 0.58 +0.2 2,091,993 - Pf6N2E2_1770 0.58 -0.1 2,091,993 - Pf6N2E2_1770 0.58 +0.0 2,092,010 + Pf6N2E2_1770 0.60 +0.8 2,092,010 + Pf6N2E2_1770 0.60 +0.0 2,092,011 - Pf6N2E2_1770 0.60 -1.2 2,092,122 - Pf6N2E2_1770 0.70 +0.8 2,092,217 + Pf6N2E2_1770 0.79 +0.0 2,092,217 + Pf6N2E2_1770 0.79 -0.0 2,092,217 + Pf6N2E2_1770 0.79 -0.4 2,092,217 + Pf6N2E2_1770 0.79 -0.7 2,092,217 + Pf6N2E2_1770 0.79 -1.2 2,092,218 - Pf6N2E2_1770 0.79 +0.3 2,092,266 - Pf6N2E2_1770 0.84 +0.3 2,092,331 + +1.3 2,092,365 + +0.8 2,092,423 + +0.8 2,092,424 - -0.2 2,092,532 - -0.2 2,092,639 - Pf6N2E2_1771 0.15 +0.8 2,092,641 - Pf6N2E2_1771 0.15 +0.8 2,092,641 - Pf6N2E2_1771 0.15 +0.8 2,092,657 - Pf6N2E2_1771 0.17 -0.2 2,092,668 - Pf6N2E2_1771 0.18 -1.1 2,092,668 - Pf6N2E2_1771 0.18 +1.2 2,092,668 - Pf6N2E2_1771 0.18 +0.8 2,092,668 - Pf6N2E2_1771 0.18 +0.2 2,092,903 + Pf6N2E2_1771 0.42 +0.2 2,092,903 + Pf6N2E2_1771 0.42 +0.8 2,092,904 - Pf6N2E2_1771 0.42 +0.8 2,093,014 - Pf6N2E2_1771 0.53 +1.4 2,093,022 + Pf6N2E2_1771 0.54 +0.7 2,093,022 + Pf6N2E2_1771 0.54 +2.0 2,093,022 + Pf6N2E2_1771 0.54 -1.4 2,093,022 + Pf6N2E2_1771 0.54 -1.9 2,093,022 + Pf6N2E2_1771 0.54 -0.2 2,093,022 + Pf6N2E2_1771 0.54 +0.3 2,093,023 - Pf6N2E2_1771 0.54 -0.5 2,093,023 - Pf6N2E2_1771 0.54 -0.4 2,093,023 - Pf6N2E2_1771 0.54 +1.1 2,093,023 - Pf6N2E2_1771 0.54 +0.1 2,093,049 - Pf6N2E2_1771 0.56 -0.5 2,093,088 - Pf6N2E2_1771 0.60 +0.8 2,093,088 - Pf6N2E2_1771 0.60 +1.0 2,093,088 - Pf6N2E2_1771 0.60 -0.8 2,093,187 + Pf6N2E2_1771 0.71 +0.8 2,093,187 + Pf6N2E2_1771 0.71 -0.8 2,093,188 - Pf6N2E2_1771 0.71 +0.5 2,093,329 - Pf6N2E2_1771 0.85 +1.5 2,093,329 - Pf6N2E2_1771 0.85 -0.2 2,093,556 + -0.0 2,093,556 + +1.9 2,093,556 + -0.2 2,093,557 - +1.8 2,093,557 - +0.8 2,093,557 - -0.8 2,093,557 - -1.5 2,093,557 - +0.2 2,093,601 - +0.8 2,093,601 - -0.7 2,093,779 - -0.5 2,093,779 - +0.8 2,093,825 + +0.8 2,094,176 - Pf6N2E2_1772 0.22 -0.7 2,094,176 - Pf6N2E2_1772 0.22 -0.9 2,094,318 - Pf6N2E2_1772 0.27 -0.2 2,094,318 - Pf6N2E2_1772 0.27 +0.5 2,094,412 - Pf6N2E2_1772 0.30 +0.8
Or see this region's nucleotide sequence