Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2396 and Pf6N2E2_2397 overlap by 4 nucleotides Pf6N2E2_2397 and Pf6N2E2_2398 are separated by 175 nucleotides
Pf6N2E2_2396 - Sensor histidine kinase, at 2,834,832 to 2,836,166
_2396
Pf6N2E2_2397 - Two-component system response regulator QseB, at 2,836,163 to 2,836,843
_2397
Pf6N2E2_2398 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 2,837,019 to 2,838,746
_2398
Position (kb)
2836
2837 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2835.198 kb on + strand, within Pf6N2E2_2396 at 2835.198 kb on + strand, within Pf6N2E2_2396 at 2835.198 kb on + strand, within Pf6N2E2_2396 at 2835.199 kb on - strand, within Pf6N2E2_2396 at 2835.302 kb on + strand, within Pf6N2E2_2396 at 2835.303 kb on - strand, within Pf6N2E2_2396 at 2835.303 kb on - strand, within Pf6N2E2_2396 at 2835.303 kb on - strand, within Pf6N2E2_2396 at 2835.723 kb on + strand, within Pf6N2E2_2396 at 2836.265 kb on - strand, within Pf6N2E2_2397 at 2836.443 kb on + strand, within Pf6N2E2_2397 at 2836.444 kb on - strand, within Pf6N2E2_2397 at 2836.444 kb on - strand, within Pf6N2E2_2397 at 2836.846 kb on + strand at 2836.847 kb on - strand at 2836.847 kb on - strand at 2836.847 kb on - strand at 2836.865 kb on + strand at 2836.865 kb on + strand at 2836.865 kb on + strand at 2836.866 kb on - strand at 2836.870 kb on + strand at 2836.871 kb on - strand at 2836.871 kb on - strand at 2836.871 kb on - strand at 2836.897 kb on + strand at 2837.006 kb on + strand at 2837.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 2,835,198 + Pf6N2E2_2396 0.27 -0.7 2,835,198 + Pf6N2E2_2396 0.27 -0.6 2,835,198 + Pf6N2E2_2396 0.27 -0.4 2,835,199 - Pf6N2E2_2396 0.27 -1.1 2,835,302 + Pf6N2E2_2396 0.35 -0.3 2,835,303 - Pf6N2E2_2396 0.35 +0.1 2,835,303 - Pf6N2E2_2396 0.35 -1.1 2,835,303 - Pf6N2E2_2396 0.35 -0.1 2,835,723 + Pf6N2E2_2396 0.67 +0.5 2,836,265 - Pf6N2E2_2397 0.15 -0.1 2,836,443 + Pf6N2E2_2397 0.41 -0.9 2,836,444 - Pf6N2E2_2397 0.41 +2.9 2,836,444 - Pf6N2E2_2397 0.41 -2.1 2,836,846 + +0.3 2,836,847 - -0.1 2,836,847 - +0.1 2,836,847 - -1.5 2,836,865 + +0.3 2,836,865 + -0.1 2,836,865 + +0.3 2,836,866 - -0.3 2,836,870 + +0.8 2,836,871 - +0.9 2,836,871 - -0.9 2,836,871 - -0.3 2,836,897 + +0.0 2,837,006 + +0.1 2,837,014 + -0.7
Or see this region's nucleotide sequence