Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1649 and Pf6N2E2_1650 overlap by 4 nucleotides Pf6N2E2_1650 and Pf6N2E2_1651 are separated by 84 nucleotides
Pf6N2E2_1649 - Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19), at 1,954,691 to 1,955,845
_1649
Pf6N2E2_1650 - Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) , at 1,955,842 to 1,957,344
_1650
Pf6N2E2_1651 - Sucrose specific transcriptional regulator CscR, LacI family, at 1,957,429 to 1,958,412
_1651
Position (kb)
1955
1956
1957
1958 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1954.941 kb on - strand, within Pf6N2E2_1649 at 1954.949 kb on + strand, within Pf6N2E2_1649 at 1955.255 kb on + strand, within Pf6N2E2_1649 at 1955.255 kb on + strand, within Pf6N2E2_1649 at 1955.255 kb on + strand, within Pf6N2E2_1649 at 1955.256 kb on - strand, within Pf6N2E2_1649 at 1955.355 kb on - strand, within Pf6N2E2_1649 at 1955.355 kb on - strand, within Pf6N2E2_1649 at 1955.613 kb on - strand, within Pf6N2E2_1649 at 1955.841 kb on + strand at 1955.841 kb on + strand at 1955.841 kb on + strand at 1955.842 kb on - strand at 1955.954 kb on - strand at 1956.031 kb on + strand, within Pf6N2E2_1650 at 1956.032 kb on - strand, within Pf6N2E2_1650 at 1956.032 kb on - strand, within Pf6N2E2_1650 at 1956.032 kb on - strand, within Pf6N2E2_1650 at 1956.070 kb on + strand, within Pf6N2E2_1650 at 1956.070 kb on + strand, within Pf6N2E2_1650 at 1956.071 kb on - strand, within Pf6N2E2_1650 at 1956.209 kb on - strand, within Pf6N2E2_1650 at 1956.508 kb on + strand, within Pf6N2E2_1650 at 1956.508 kb on + strand, within Pf6N2E2_1650 at 1956.509 kb on - strand, within Pf6N2E2_1650 at 1956.563 kb on - strand, within Pf6N2E2_1650 at 1956.563 kb on - strand, within Pf6N2E2_1650 at 1956.592 kb on + strand, within Pf6N2E2_1650 at 1956.610 kb on + strand, within Pf6N2E2_1650 at 1956.611 kb on - strand, within Pf6N2E2_1650 at 1957.060 kb on + strand, within Pf6N2E2_1650 at 1957.061 kb on - strand, within Pf6N2E2_1650 at 1957.063 kb on + strand, within Pf6N2E2_1650 at 1957.176 kb on - strand, within Pf6N2E2_1650 at 1957.243 kb on + strand at 1957.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 1,954,941 - Pf6N2E2_1649 0.22 -3.6 1,954,949 + Pf6N2E2_1649 0.22 -2.5 1,955,255 + Pf6N2E2_1649 0.49 -0.5 1,955,255 + Pf6N2E2_1649 0.49 -2.1 1,955,255 + Pf6N2E2_1649 0.49 -1.1 1,955,256 - Pf6N2E2_1649 0.49 -0.5 1,955,355 - Pf6N2E2_1649 0.57 -3.1 1,955,355 - Pf6N2E2_1649 0.57 -5.0 1,955,613 - Pf6N2E2_1649 0.80 -2.8 1,955,841 + +0.5 1,955,841 + -0.5 1,955,841 + -2.9 1,955,842 - -1.1 1,955,954 - -1.8 1,956,031 + Pf6N2E2_1650 0.13 -1.5 1,956,032 - Pf6N2E2_1650 0.13 -2.3 1,956,032 - Pf6N2E2_1650 0.13 -1.1 1,956,032 - Pf6N2E2_1650 0.13 -1.8 1,956,070 + Pf6N2E2_1650 0.15 -3.4 1,956,070 + Pf6N2E2_1650 0.15 -1.5 1,956,071 - Pf6N2E2_1650 0.15 -3.9 1,956,209 - Pf6N2E2_1650 0.24 -1.8 1,956,508 + Pf6N2E2_1650 0.44 -1.5 1,956,508 + Pf6N2E2_1650 0.44 -1.5 1,956,509 - Pf6N2E2_1650 0.44 -0.5 1,956,563 - Pf6N2E2_1650 0.48 -1.8 1,956,563 - Pf6N2E2_1650 0.48 +0.5 1,956,592 + Pf6N2E2_1650 0.50 -1.8 1,956,610 + Pf6N2E2_1650 0.51 -4.2 1,956,611 - Pf6N2E2_1650 0.51 -0.5 1,957,060 + Pf6N2E2_1650 0.81 -2.3 1,957,061 - Pf6N2E2_1650 0.81 -1.5 1,957,063 + Pf6N2E2_1650 0.81 -5.6 1,957,176 - Pf6N2E2_1650 0.89 -2.3 1,957,243 + -4.0 1,957,275 - -2.5
Or see this region's nucleotide sequence