Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_818 and Pf6N2E2_819 overlap by 8 nucleotides Pf6N2E2_819 and Pf6N2E2_820 are separated by 267 nucleotides
Pf6N2E2_818 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 951,775 to 953,055
_818
Pf6N2E2_819 - Response regulator, at 953,048 to 953,425
_819
Pf6N2E2_820 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 953,693 to 955,363
_820
Position (kb) 953
954 Strain fitness (log2 ratio) -2
-1
0
1 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.057 kb on + strand, within Pf6N2E2_818 at 952.058 kb on - strand, within Pf6N2E2_818 at 952.058 kb on - strand, within Pf6N2E2_818 at 952.058 kb on - strand, within Pf6N2E2_818 at 952.156 kb on + strand, within Pf6N2E2_818 at 952.157 kb on - strand, within Pf6N2E2_818 at 952.157 kb on - strand, within Pf6N2E2_818 at 952.157 kb on - strand, within Pf6N2E2_818 at 952.191 kb on - strand, within Pf6N2E2_818 at 952.720 kb on + strand, within Pf6N2E2_818 at 952.743 kb on + strand, within Pf6N2E2_818 at 952.794 kb on + strand, within Pf6N2E2_818 at 952.794 kb on + strand, within Pf6N2E2_818 at 952.794 kb on + strand, within Pf6N2E2_818 at 953.015 kb on + strand at 953.016 kb on - strand at 953.025 kb on + strand at 953.025 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.073 kb on + strand at 953.074 kb on - strand at 953.120 kb on + strand, within Pf6N2E2_819 at 953.148 kb on + strand, within Pf6N2E2_819 at 953.148 kb on + strand, within Pf6N2E2_819 at 953.149 kb on - strand, within Pf6N2E2_819 at 953.312 kb on + strand, within Pf6N2E2_819 at 953.423 kb on + strand at 953.485 kb on - strand at 953.519 kb on + strand at 953.520 kb on - strand at 953.633 kb on - strand at 953.633 kb on - strand at 953.809 kb on - strand at 954.101 kb on + strand, within Pf6N2E2_820 at 954.101 kb on + strand, within Pf6N2E2_820 at 954.102 kb on - strand, within Pf6N2E2_820 at 954.204 kb on + strand, within Pf6N2E2_820 at 954.205 kb on - strand, within Pf6N2E2_820 at 954.330 kb on + strand, within Pf6N2E2_820 at 954.330 kb on + strand, within Pf6N2E2_820 at 954.331 kb on - strand, within Pf6N2E2_820 at 954.331 kb on - strand, within Pf6N2E2_820 at 954.331 kb on - strand, within Pf6N2E2_820 at 954.354 kb on + strand, within Pf6N2E2_820
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 952,057 + Pf6N2E2_818 0.22 +1.0 952,057 + Pf6N2E2_818 0.22 +1.0 952,057 + Pf6N2E2_818 0.22 -0.0 952,057 + Pf6N2E2_818 0.22 +1.0 952,058 - Pf6N2E2_818 0.22 -0.6 952,058 - Pf6N2E2_818 0.22 +1.0 952,058 - Pf6N2E2_818 0.22 -0.2 952,156 + Pf6N2E2_818 0.30 +1.0 952,157 - Pf6N2E2_818 0.30 +1.0 952,157 - Pf6N2E2_818 0.30 -0.0 952,157 - Pf6N2E2_818 0.30 +1.0 952,191 - Pf6N2E2_818 0.32 +1.0 952,720 + Pf6N2E2_818 0.74 -0.6 952,743 + Pf6N2E2_818 0.76 +1.0 952,794 + Pf6N2E2_818 0.80 -1.0 952,794 + Pf6N2E2_818 0.80 +0.2 952,794 + Pf6N2E2_818 0.80 -0.0 953,015 + +1.0 953,016 - -0.0 953,025 + -0.6 953,025 + -1.0 953,073 + +1.0 953,073 + +1.0 953,073 + +0.1 953,073 + +1.0 953,073 + -1.3 953,074 - -1.0 953,120 + Pf6N2E2_819 0.19 +0.3 953,148 + Pf6N2E2_819 0.26 -0.0 953,148 + Pf6N2E2_819 0.26 -1.0 953,149 - Pf6N2E2_819 0.27 -0.0 953,312 + Pf6N2E2_819 0.70 -1.3 953,423 + +0.8 953,485 - +1.0 953,519 + +1.0 953,520 - +0.3 953,633 - -1.2 953,633 - +0.3 953,809 - -0.6 954,101 + Pf6N2E2_820 0.24 -1.0 954,101 + Pf6N2E2_820 0.24 +0.6 954,102 - Pf6N2E2_820 0.24 +1.0 954,204 + Pf6N2E2_820 0.31 +1.0 954,205 - Pf6N2E2_820 0.31 -0.0 954,330 + Pf6N2E2_820 0.38 -0.6 954,330 + Pf6N2E2_820 0.38 +0.4 954,331 - Pf6N2E2_820 0.38 -0.0 954,331 - Pf6N2E2_820 0.38 -0.6 954,331 - Pf6N2E2_820 0.38 -2.2 954,354 + Pf6N2E2_820 0.40 -1.6
Or see this region's nucleotide sequence