Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6137 and Pf6N2E2_6138 are separated by 80 nucleotides Pf6N2E2_6138 and Pf6N2E2_6139 are separated by 33 nucleotides Pf6N2E2_6139 and Pf6N2E2_6140 are separated by 247 nucleotides Pf6N2E2_6140 and Pf6N2E2_6141 are separated by 166 nucleotides Pf6N2E2_6141 and Pf6N2E2_4841 are separated by 44 nucleotides
Pf6N2E2_6137 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 5,594,492 to 5,596,019
_6137
Pf6N2E2_6138 - tRNA-Ile-GAT, at 5,596,100 to 5,596,173
_6138
Pf6N2E2_6139 - tRNA-Ala-TGC, at 5,596,207 to 5,596,279
_6139
Pf6N2E2_6140 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 5,596,527 to 5,599,419
_6140
Pf6N2E2_6141 - 5S RNA, at 5,599,586 to 5,599,705
_6141
Pf6N2E2_4841 - Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15), at 5,599,750 to 5,600,793
_4841
Position (kb) 5596
5597
5598
5599
5600 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5596.034 kb on + strand at 5596.920 kb on + strand, within Pf6N2E2_6140 at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.418 kb on + strand at 5599.438 kb on + strand at 5599.438 kb on + strand at 5599.438 kb on + strand at 5599.737 kb on + strand at 5599.737 kb on + strand at 5599.779 kb on + strand at 5599.779 kb on + strand at 5599.780 kb on - strand at 5599.780 kb on - strand at 5599.780 kb on - strand at 5599.850 kb on + strand at 5599.850 kb on + strand at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.917 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.958 kb on + strand, within Pf6N2E2_4841 at 5599.974 kb on + strand, within Pf6N2E2_4841 at 5599.986 kb on + strand, within Pf6N2E2_4841 at 5599.993 kb on + strand, within Pf6N2E2_4841 at 5600.004 kb on + strand, within Pf6N2E2_4841
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 5,596,034 + -0.6 5,596,920 + Pf6N2E2_6140 0.14 -1.3 5,599,418 + -2.4 5,599,418 + -1.4 5,599,418 + -0.1 5,599,418 + +0.7 5,599,418 + +0.5 5,599,418 + -0.4 5,599,418 + -1.3 5,599,438 + -2.4 5,599,438 + +0.1 5,599,438 + +0.3 5,599,737 + +1.9 5,599,737 + -0.1 5,599,779 + -0.9 5,599,779 + +1.9 5,599,780 - -0.7 5,599,780 - +1.3 5,599,780 - +1.9 5,599,850 + -0.0 5,599,850 + +0.6 5,599,917 + Pf6N2E2_4841 0.16 -0.4 5,599,917 + Pf6N2E2_4841 0.16 -0.4 5,599,917 + Pf6N2E2_4841 0.16 -0.2 5,599,917 + Pf6N2E2_4841 0.16 -0.1 5,599,958 + Pf6N2E2_4841 0.20 -0.4 5,599,958 + Pf6N2E2_4841 0.20 +0.9 5,599,958 + Pf6N2E2_4841 0.20 -1.5 5,599,958 + Pf6N2E2_4841 0.20 -0.6 5,599,958 + Pf6N2E2_4841 0.20 -1.1 5,599,974 + Pf6N2E2_4841 0.21 +0.9 5,599,986 + Pf6N2E2_4841 0.23 -0.3 5,599,993 + Pf6N2E2_4841 0.23 +0.1 5,600,004 + Pf6N2E2_4841 0.24 -0.3
Or see this region's nucleotide sequence