Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4307

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4305 and Pf6N2E2_4306 are separated by 19 nucleotidesPf6N2E2_4306 and Pf6N2E2_4307 are separated by 5 nucleotidesPf6N2E2_4307 and Pf6N2E2_4308 overlap by 4 nucleotides Pf6N2E2_4305 - FIG00959590: hypothetical protein, at 5,022,027 to 5,022,167 _4305 Pf6N2E2_4306 - Uncharacterized protein ImpI/VasC, at 5,022,187 to 5,023,032 _4306 Pf6N2E2_4307 - Type VI secretion lipoprotein/VasD, at 5,023,038 to 5,023,541 _4307 Pf6N2E2_4308 - Uncharacterized protein ImpJ/VasE, at 5,023,538 to 5,024,869 _4308 Position (kb) 5023 5024Strain fitness (log2 ratio) -2 -1 0 1 2at 5022.093 kb on - strand, within Pf6N2E2_4305at 5022.124 kb on - strand, within Pf6N2E2_4305at 5022.162 kb on - strandat 5022.180 kb on + strandat 5022.180 kb on + strandat 5022.181 kb on - strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.184 kb on + strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.185 kb on - strandat 5022.233 kb on + strandat 5022.234 kb on - strandat 5022.420 kb on - strand, within Pf6N2E2_4306at 5022.450 kb on - strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.466 kb on + strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.467 kb on - strand, within Pf6N2E2_4306at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.691 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306at 5022.699 kb on + strand, within Pf6N2E2_4306at 5022.979 kb on + strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5022.980 kb on - strandat 5023.272 kb on + strand, within Pf6N2E2_4307at 5023.365 kb on - strand, within Pf6N2E2_4307at 5023.393 kb on + strand, within Pf6N2E2_4307at 5023.405 kb on - strand, within Pf6N2E2_4307at 5023.434 kb on + strand, within Pf6N2E2_4307at 5023.528 kb on + strandat 5023.528 kb on + strandat 5023.528 kb on + strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.529 kb on - strandat 5023.610 kb on + strandat 5023.611 kb on - strandat 5023.611 kb on - strandat 5023.655 kb on + strandat 5023.655 kb on + strandat 5023.656 kb on - strandat 5023.656 kb on - strandat 5023.798 kb on - strand, within Pf6N2E2_4308at 5023.798 kb on - strand, within Pf6N2E2_4308at 5023.807 kb on + strand, within Pf6N2E2_4308at 5023.807 kb on + strand, within Pf6N2E2_4308at 5023.826 kb on + strand, within Pf6N2E2_4308at 5023.826 kb on + strand, within Pf6N2E2_4308at 5023.901 kb on + strand, within Pf6N2E2_4308at 5023.902 kb on - strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.910 kb on + strand, within Pf6N2E2_4308at 5023.911 kb on - strand, within Pf6N2E2_4308at 5023.911 kb on - strand, within Pf6N2E2_4308at 5023.911 kb on - strand, within Pf6N2E2_4308at 5024.127 kb on - strand, within Pf6N2E2_4308at 5024.127 kb on - strand, within Pf6N2E2_4308at 5024.127 kb on - strand, within Pf6N2E2_4308at 5024.254 kb on + strand, within Pf6N2E2_4308at 5024.255 kb on - strand, within Pf6N2E2_4308at 5024.255 kb on - strand, within Pf6N2E2_4308at 5024.286 kb on - strand, within Pf6N2E2_4308at 5024.286 kb on - strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.304 kb on + strand, within Pf6N2E2_4308at 5024.305 kb on - strand, within Pf6N2E2_4308at 5024.305 kb on - strand, within Pf6N2E2_4308at 5024.305 kb on - strand, within Pf6N2E2_4308at 5024.320 kb on - strand, within Pf6N2E2_4308at 5024.322 kb on - strand, within Pf6N2E2_4308at 5024.331 kb on + strand, within Pf6N2E2_4308at 5024.332 kb on - strand, within Pf6N2E2_4308at 5024.408 kb on - strand, within Pf6N2E2_4308at 5024.408 kb on - strand, within Pf6N2E2_4308

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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5,022,093 - Pf6N2E2_4305 0.47 -0.9
5,022,124 - Pf6N2E2_4305 0.69 -0.2
5,022,162 - -0.1
5,022,180 + -0.3
5,022,180 + -0.5
5,022,181 - +0.3
5,022,184 + -1.0
5,022,184 + +0.5
5,022,184 + -0.0
5,022,184 + -0.1
5,022,184 + -0.5
5,022,185 - +1.1
5,022,185 - +0.8
5,022,185 - -0.1
5,022,185 - +0.6
5,022,185 - -1.1
5,022,233 + -0.2
5,022,234 - -0.5
5,022,420 - Pf6N2E2_4306 0.28 -0.2
5,022,450 - Pf6N2E2_4306 0.31 -1.5
5,022,466 + Pf6N2E2_4306 0.33 -0.8
5,022,466 + Pf6N2E2_4306 0.33 -0.9
5,022,466 + Pf6N2E2_4306 0.33 +1.1
5,022,467 - Pf6N2E2_4306 0.33 +0.1
5,022,467 - Pf6N2E2_4306 0.33 +0.4
5,022,467 - Pf6N2E2_4306 0.33 +1.9
5,022,467 - Pf6N2E2_4306 0.33 +2.1
5,022,691 + Pf6N2E2_4306 0.60 +2.1
5,022,691 + Pf6N2E2_4306 0.60 +0.5
5,022,699 + Pf6N2E2_4306 0.61 -0.2
5,022,699 + Pf6N2E2_4306 0.61 +0.4
5,022,979 + -0.5
5,022,980 - +2.1
5,022,980 - -0.2
5,022,980 - +0.1
5,022,980 - -0.7
5,022,980 - +1.1
5,022,980 - +1.1
5,023,272 + Pf6N2E2_4307 0.46 -1.7
5,023,365 - Pf6N2E2_4307 0.65 -0.9
5,023,393 + Pf6N2E2_4307 0.70 -1.5
5,023,405 - Pf6N2E2_4307 0.73 -0.2
5,023,434 + Pf6N2E2_4307 0.79 +2.1
5,023,528 + -0.5
5,023,528 + -1.2
5,023,528 + -0.8
5,023,529 - +1.1
5,023,529 - -0.1
5,023,529 - -0.7
5,023,529 - -0.5
5,023,529 - -2.2
5,023,610 + -1.3
5,023,611 - -0.2
5,023,611 - +0.1
5,023,655 + -0.5
5,023,655 + +0.3
5,023,656 - -0.2
5,023,656 - -1.8
5,023,798 - Pf6N2E2_4308 0.20 +0.4
5,023,798 - Pf6N2E2_4308 0.20 +1.1
5,023,807 + Pf6N2E2_4308 0.20 +0.3
5,023,807 + Pf6N2E2_4308 0.20 -0.6
5,023,826 + Pf6N2E2_4308 0.22 -0.2
5,023,826 + Pf6N2E2_4308 0.22 +0.3
5,023,901 + Pf6N2E2_4308 0.27 +0.6
5,023,902 - Pf6N2E2_4308 0.27 +0.0
5,023,910 + Pf6N2E2_4308 0.28 +0.9
5,023,910 + Pf6N2E2_4308 0.28 +0.5
5,023,910 + Pf6N2E2_4308 0.28 +0.0
5,023,910 + Pf6N2E2_4308 0.28 +0.3
5,023,910 + Pf6N2E2_4308 0.28 +1.0
5,023,910 + Pf6N2E2_4308 0.28 -0.1
5,023,911 - Pf6N2E2_4308 0.28 -0.0
5,023,911 - Pf6N2E2_4308 0.28 +0.3
5,023,911 - Pf6N2E2_4308 0.28 -0.1
5,024,127 - Pf6N2E2_4308 0.44 +0.1
5,024,127 - Pf6N2E2_4308 0.44 +0.7
5,024,127 - Pf6N2E2_4308 0.44 -0.9
5,024,254 + Pf6N2E2_4308 0.54 -0.1
5,024,255 - Pf6N2E2_4308 0.54 -0.9
5,024,255 - Pf6N2E2_4308 0.54 -0.5
5,024,286 - Pf6N2E2_4308 0.56 +0.2
5,024,286 - Pf6N2E2_4308 0.56 -0.1
5,024,304 + Pf6N2E2_4308 0.58 +0.1
5,024,304 + Pf6N2E2_4308 0.58 +0.1
5,024,304 + Pf6N2E2_4308 0.58 +0.2
5,024,304 + Pf6N2E2_4308 0.58 +1.1
5,024,304 + Pf6N2E2_4308 0.58 +2.1
5,024,304 + Pf6N2E2_4308 0.58 +1.1
5,024,304 + Pf6N2E2_4308 0.58 +0.2
5,024,305 - Pf6N2E2_4308 0.58 -0.6
5,024,305 - Pf6N2E2_4308 0.58 -0.1
5,024,305 - Pf6N2E2_4308 0.58 -0.0
5,024,320 - Pf6N2E2_4308 0.59 +0.1
5,024,322 - Pf6N2E2_4308 0.59 +0.7
5,024,331 + Pf6N2E2_4308 0.60 +0.5
5,024,332 - Pf6N2E2_4308 0.60 -0.4
5,024,408 - Pf6N2E2_4308 0.65 +1.8
5,024,408 - Pf6N2E2_4308 0.65 +1.1

Or see this region's nucleotide sequence